Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2038 ATGGTGTTATATGGTAGTCTTTTTCTGAAACTTATTAATAAATTATTGTCATGGTTATCATCAGGTGAATATGACAAAGAAGAAAAGGCTGCGAGAGCTTATGATTTGGCAGCTTTAAAGTATTGGGGTCCCACTGCTACCGCCAACTTCCCGGTTTCCAATTACCCAAAGGGACTGGAGGAGATGAAACACGTAACAAAGCAAGAATTCATTGCATCACTGAGAAGGAAAAGTAGTGGCTTTTCCAGGGGAGCTTCCATATACAGAGGTGTGACAAGGCATCACCAACAAGGGAGGTGGCAAGCAAGAATTGGTCGAGTTGCCGGAAACAAAGATCTTTACTTGGGAACATTCGGTAAGTATTTCACCTTCATTTTCCATTGTGTTCCTGTGTTAACGAAGATGATTATTCAAATTGCTGAGTTTCATATACTATATGCTGATCTTATGTTATCACTTAATCCTTTTCTTAAGGACAACATTAACAATAACATCAAGAAGAAGAAGAAGAAATGGGCGATCGTTAAGAAAAAGAGAAAAGACTTTCACCGCGTCGACCTCACGAGGCTGCTTCCTTTTATGCCGGAGAAGCTTGAGGAGGAGAAGAGCTCCGAAAAGTGGATTACGAGTTTTAGGCTAACTGGACTGGCTAAGGGTGGCGTGATGAATGTTAGTTTT 678 0.4086 MVLYGSLFLKLINKLLSWLSSGEYDKEEKAARAYDLAALKYWGPTATANFPVSNYPKGLEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFGKYFTFIFHCVPVLTKMIIQIAEFHILYADLMLSLNPFLKDNINNNIKKKKKKWAIVKKKRKDFHRVDLTRLLPFMPEKLEEEKSSEKWITSFRLTGLAKGGVMNVSF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2038 226 SUPERFAMILY DNA-binding domain 86 120 IPR016177 GO:0003677
Amo11g2038 226 Gene3D AP2/ERF domain 15 53 IPR036955 GO:0003700|GO:0006355
Amo11g2038 226 Gene3D AP2/ERF domain 87 121 IPR036955 GO:0003700|GO:0006355
Amo11g2038 226 SUPERFAMILY DNA-binding domain 21 53 IPR016177 GO:0003677
Amo11g2038 226 ProSiteProfiles AP2/ERF domain profile. 87 118 IPR001471 GO:0003700|GO:0006355
Amo11g2038 226 SMART rav1_2 87 129 IPR001471 GO:0003700|GO:0006355
Amo11g2038 226 SMART rav1_2 3 57 IPR001471 GO:0003700|GO:0006355
Amo11g2038 226 ProSiteProfiles AP2/ERF domain profile. 22 51 IPR001471 GO:0003700|GO:0006355
Amo11g2038 226 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 21 119 - -
Amo11g2038 226 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2038 Amo-Chr11 110747534 110751451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2038 22 118 AP2-EREBP Transcription Factor Family AT5G65510 89.691 2.33e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo11g2038 AP2 0.00034 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2038 K09285 - zju:107425151 196.438