Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2024 ATGCGTGGTATCAGCTATTTGAATAATAAGTACTCATCACCATCTCCATTCCAATCTCATTCGTATGATGCTAATAACATGCCGCCATCATCATCTGTAATTAGCAGAATAAGTCCACTCATTCTGTTAGTTATAATAGTCTTAGCAGTTATCTTCTTCGCTTATGGCCTTGTCCATTTGATTCTATGGTTCTTCATCAAAATCCTATCATCATCCTCGTCGTCGTCGTCTAACAGGTTCCAAGAATCATCGAGGCGCTCCCGCGCGATTCAGAGACAGCTTCACCATCTCTTCCGAATGCACGATTCGGGACTAGAACAATCCACCATTGATGCTCTCCCAGTGTTCTACTACCAAGAATTGTTGGGGCTAAAAGAACCATTTGATTGTGCAGTGTGCCTCTGCGAATTCTCTGCGAACGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCATGCATTTCACATGAACTGCCTCGACACATGGCTTCTCTCAAACTCTACATGTCCTCTCTGTAGAGCAAATCTCTCTAGCTCTATCGTGAATCAGAATCCAGTGTTGCTTCGTGTTGTTGAGGAAGAGAATAAGAATGGTGGTGAAGGGAGTGAAGAGGAAGACGAAGGTGGTGGTGGGAGGAAAAGGGTGTTTTGTGTAAGACTTGGGAAACTGAGGAACAGTGAATTGATTCAGAGAGAAGAGGGTAGTAGTAGTAGTAGTCGTATAGGGTTGGATGGGAGAAGATGCTACTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATCTGAAAGTGGAAGTGGTGTTATCATCTCAGTCTCTTCATGTTGGTGGTGAAGAACAAGAAGAAGAAAATGATGATGGAAAGAAGATAGGGAAGAAGAGAACCAGAGCCGTTCCGACGCATCATAATACCATTATTCCCCCTAACGTCGTTCAACCGCTGTCCGTGCACATCGCCGACATGGCCACAGTTCAAGGATGGGCAGACACGAGGAGCCTCAGCCTTCATGTCATCACCGGCCGCTGGTTCCTGGTGTTCGCCTCCTTCTTAATCATGGTAGCCGCCAGAGCCACCTACATGTTCGGCCTCTACTCCAGCGAAATCAAAAGCACCCTCGGATACGACCAAACCACCCTCAATCTCCTCAACTTCTTCAAGGACTTTGACAGCAACGTTGGCATCCTCTCTGGCCTCATCAACGAGCTAACCTCACCCTGGGTGGTTCTAGCCATCGGCGCAATCCTCAACCTGTTCCGCTACCTCATGATTTGGTTCTCTATCACCAAAAGAGTTGTGAGACTAACGGTCTGGCAAATGTACTTATACATTTGCATCAGCGCTAACTCTCAGTCATTCGCGAACACCGACTCTCTTGTCACGTGCGTCAAGAACTTTTCAGAAAGCCATGACATCGTTTTGGGGATCTTGAAAAGCTACGTTGGACTCAGCAGAGCGATCACAACTCTATTATACTCTGCGATTTGCTATGATGACACCAAGGCTTTGATTCTCCTCATTGGTTGGCTTTCTGCCACAATCTCCGTCGTTTTCCTCTGA 1557 0.4637 MRGISYLNNKYSSPSPFQSHSYDANNMPPSSSVISRISPLILLVIIVLAVIFFAYGLVHLILWFFIKILSSSSSSSSNRFQESSRRSRAIQRQLHHLFRMHDSGLEQSTIDALPVFYYQELLGLKEPFDCAVCLCEFSANEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANLSSSIVNQNPVLLRVVEEENKNGGEGSEEEDEGGGGRKRVFCVRLGKLRNSELIQREEGSSSSSRIGLDGRRCYSMGSYEYVVRESNLKVEVVLSSQSLHVGGEEQEEENDDGKKIGKKRTRAVPTHHNTIIPPNVVQPLSVHIADMATVQGWADTRSLSLHVITGRWFLVFASFLIMVAARATYMFGLYSSEIKSTLGYDQTTLNLLNFFKDFDSNVGILSGLINELTSPWVVLAIGAILNLFRYLMIWFSITKRVVRLTVWQMYLYICISANSQSFANTDSLVTCVKNFSESHDIVLGILKSYVGLSRAITTLLYSAICYDDTKALILLIGWLSATISVVFL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2024 518 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 24 293 - -
Amo11g2024 518 SUPERFAMILY RING/U-box 109 183 - -
Amo11g2024 518 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Amo11g2024 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 24 293 - -
Amo11g2024 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Amo11g2024 518 Pfam Nodulin-like 341 518 IPR010658 -
Amo11g2024 518 SUPERFAMILY MFS general substrate transporter 341 516 IPR036259 -
Amo11g2024 518 CDD RING-H2_PA-TM-RING 129 172 - -
Amo11g2024 518 Pfam Ring finger domain 129 172 IPR001841 -
Amo11g2024 518 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2024 Amo-Chr11 110183909 110187012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2024 331 518 Nodulin-like Gene Family AT2G39210 64.894 4.68e-80 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2024 - - adu:107492432 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2024 11 110183909 110187012 Amo11g2024 11 110183909 110187012 ECH