Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2020 GCAGTCGGCGCTACCCAACCGGTCTTCCCGCACGATTGGAGTGTTTCCTTCAAGCTTGGTGTTCGCTGCTGCCATCGTCCCGCGCGCCTCCCTCGTGCTACCGTCGAGCGTCAGTCGTCGACTAGGAGCTCCCTGTCGCCGTCGCCTGCCCGCCGGACATCCGCACGCCCATGTGGACCTGTGTCTTTATGGTGGTGCAATGGGATTGAGTTCTTGCTGTTTATATATGGTGGGGCTCCATACCAGACTCAGGAGAGTAAGCTTAGAAGAGGCGTTGATATTGTTGTTGGCACTCCAGGTCGCGTGAAAGATCATATAGAGAGGAAAAATATTGACTTGAGCCAGCTAAAGTTCCATGTCCTTGATGAGGCTAATGAGATGCTCAGAATGGATTTTTGCTACTTTGCTAGCCATTTCTTGGGTAAAAAACCTAGCAATGATACAAAAAAAGTGCAGCCAAAGAATTTAATACCAAACCAGCAGAATGGAGAYCCACCTCAAGAGAAGGTATTTGACAAAACAATGGATCCAAGATGA 537 0.4935 AVGATQPVFPHDWSVSFKLGVRCCHRPARLPRATVERQSSTRSSLSPSPARRTSARPCGPVSLWWCNGIEFLLFIYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERKNIDLSQLKFHVLDEANEMLRMDFCYFASHFLGKKPSNDTKKVQPKNLIPNQQNGDPPQEKVFDKTMDPR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2020 178 MobiDBLite consensus disorder prediction 150 167 - -
Amo11g2020 178 Pfam DEAD/DEAH box helicase 73 145 IPR011545 GO:0003676|GO:0005524
Amo11g2020 178 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 73 145 - -
Amo11g2020 178 MobiDBLite consensus disorder prediction 146 178 - -
Amo11g2020 178 Gene3D - 52 153 IPR027417 -
Amo11g2020 178 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 73 145 - -
Amo11g2020 178 MobiDBLite consensus disorder prediction 34 51 - -
Amo11g2020 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 144 IPR027417 -
Amo11g2020 178 MobiDBLite consensus disorder prediction 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2020 Amo-Chr11 110048650 110049822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2020 77 132 Eukaryotic Initiation Factors Gene Family AT3G13920 44.643 9.72e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2020 K16911 - jre:108988915 105.916