Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1996 ATGGGGCGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACAAGCCGGCAAGTAACATTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCTAAAGAATTATCTGGCAAGGAAAGAAGCTCTCTCTTGTTTCCTCCGCCGCTGCCGGTGGCACCGCGGCAGCGCTCATTGCCACCTCTGACGACCCCGCAACAGCTCTCAGGTTCTGCGCCACCGTTCCCCACCGCCTCCTCCGCGACGCCGTCACTGCCGCCAACATTGCGTTCGATTATGAATATTCACTGCATGGATTGCGTGAGGAAAGAATTGAGAGGGAGATGGTCAAGCATTAAGTTCACCTCCGGTCAGCAGAGAAACTTCGAGACTTGTGTTTTAAGAACGGAGTACTTGGTTCCTCAAGAGTATGTTATAACATTGAGGGAATCTATGCTAAATAGATGTCCAGTTTCTTCATATGAGCAAATATGTGAAGTATTCAAGAGGGAGCTTGGAGACACACTGGAAAATATATTTGCTGAGTTTGACCCAATTCCAATAGCAAGTGCTTCCCTTGCACAAGTCCATGTTGCCCGCACACATGATGGCCAAAAAGTTGCTGTGAAGGTTCCTTACAGAGAAGGACAATCAATTAGGGTGATTCTAGATGGCATTGACAAGAATGGAAAGCCTCACAAGCTCGGATTGTATTCTATTGCTAGCAGTGCTCTTGGTGATCTTGCCTTGCCTTACCCAGCTGAGTTAGGTTGCTTTAGACATGATCTAGTGACAGGAATTCCGACTTGGCATCAAAGGCCACAATCTCCTCCATAG 813 0.4723 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSGKERSSLLFPPPLPVAPRQRSLPPLTTPQQLSGSAPPFPTASSATPSLPPTLRSIMNIHCMDCVRKELRGRWSSIKFTSGQQRNFETCVLRTEYLVPQEYVITLRESMLNRCPVSSYEQICEVFKRELGDTLENIFAEFDPIPIASASLAQVHVARTHDGQKVAVKVPYREGQSIRVILDGIDKNGKPHKLGLYSIASSALGDLALPYPAELGCFRHDLVTGIPTWHQRPQSPP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1996 270 SMART madsneu2 1 47 IPR002100 GO:0003677|GO:0046983
Amo11g1996 270 Pfam ABC1 atypical kinase-like domain 144 205 IPR004147 -
Amo11g1996 270 SUPERFAMILY SRF-like 1 36 IPR036879 GO:0003677|GO:0046983
Amo11g1996 270 SUPERFAMILY Riboflavin synthase domain-like 202 253 IPR017938 -
Amo11g1996 270 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Amo11g1996 270 MobiDBLite consensus disorder prediction 35 83 - -
Amo11g1996 270 MobiDBLite consensus disorder prediction 58 83 - -
Amo11g1996 270 PANTHER BNAC04G05270D PROTEIN 127 204 - -
Amo11g1996 270 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo11g1996 270 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo11g1996 270 PANTHER ABC1 FAMILY PROTEIN 127 204 - -
Amo11g1996 270 Gene3D - 13 37 IPR036879 GO:0003677|GO:0046983
Amo11g1996 270 Gene3D Translation factors 181 253 - -
Amo11g1996 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 36 IPR002100 GO:0003677|GO:0046983
Amo11g1996 270 SUPERFAMILY Protein kinase-like (PK-like) 146 207 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1996 Amo-Chr11 107068553 107070579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1996 1 36 MADS-box Gene Family AT2G14210 94.444 5.71e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo11g1996 ABC1 9.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1996 K08869 - ahf:112729182 143.28