Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1976 ATGGGCGTGCCACTTGAACAGCATGGCGTGGCACGCTGGTACAATAATCCAGAGAAGGGGCTGAAGGCAATTGAAGACTGGGCGTGCCACTTGAAGTCGAAGGCGTGGCATGCCAACCTCTCAACCTCACTTAGGCGGAAATTGAAGAGGAACTCGTCCATTAATTCGGCAGATTCATCTAAAAATGGGAATACTGATCACATTGCTGCACAGACATTCTCCTTCCGTGAGTTGGCAACTGCAACTCGACATTTTCGGGCAGAATGTCTTTTGGGTGAGGGAGGCTTTGGTAGAGTATACAAGGGCCGTTTGGAAAGTATTAATCAGATTGTTGCAATTAAACAACTTGACCGAAATGGCCTGCAAGGGAATAGAGAGTTCCTAGTTGAAGTGTTGATGTTAAGTCTTCTTCATCACCCGAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGACTTCTCGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATGTTGCTCCTGGCAAGGAACGACTAGATTGGAACACACGAATGAAAATAGCTGCCGGAGCAGCAAGCGGATTGGAATATCTTCATGACAAAGCTAACCCTCCTGTTATATACCGAGATTTAAAGTGCTCCAATATTTTGCTCAGTGAAGGGTATCATCCCAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTTGGGGAAAACACCCATGTATCAACGAGGGTTATGGGCACCTACGGATATTGTGCTCCCGAGTATGCAATGACAGGTCAGCTGACTCTGAAATCAGATGTTTATAGCTTCGGTGTAGTTCTTCTGGAAATCATTACAGGAAGGAAGGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAGGACCGAAGAAAATTTGCGCAAATGGCCGATCCAATGCTTCAAGGTCAATATCCTCCAAGAGGACTCTACCAGGCCCTTGCTGTGGCGGCAATGTGTGTTCAGGAGCAGGCCAACATGCGTCCAGTTATAGCCGATGTTGTTACAGCTTTGAGTTACCTTGCTTCCCAAAGATATGACCCGCATACACAAACAGCACAAAATTCTCGCTTCGCTCCTGGCACTCCTCCTAGAACCAAGAGGGGACACTGA 1176 0.4592 MGVPLEQHGVARWYNNPEKGLKAIEDWACHLKSKAWHANLSTSLRRKLKRNSSINSADSSKNGNTDHIAAQTFSFRELATATRHFRAECLLGEGGFGRVYKGRLESINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVAPGKERLDWNTRMKIAAGAASGLEYLHDKANPPVIYRDLKCSNILLSEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFAQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPHTQTAQNSRFAPGTPPRTKRGH* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1976 391 Gene3D Phosphorylase Kinase; domain 1 55 161 - -
Amo11g1976 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Amo11g1976 391 PANTHER OS07G0668900 PROTEIN 44 389 - -
Amo11g1976 391 Gene3D Transferase(Phosphotransferase) domain 1 162 380 - -
Amo11g1976 391 CDD STKc_IRAK 91 359 - -
Amo11g1976 391 SUPERFAMILY Protein kinase-like (PK-like) 67 359 IPR011009 -
Amo11g1976 391 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 44 389 - -
Amo11g1976 391 MobiDBLite consensus disorder prediction 369 391 - -
Amo11g1976 391 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1976 391 Pfam Protein tyrosine and serine/threonine kinase 89 358 IPR001245 GO:0004672|GO:0006468
Amo11g1976 391 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1976 391 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1976 Amo-Chr11 104543732 104548925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1976 65 364 Glycoside Hydrolase AT3G07070 72.000 3.59e-164 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo11g1976 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1976 - - gmx:100776041 654.44