Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1956 ATGCCAATTGCTCTTACTAGAAGAGATCTACTTGGCTGTGCTGAAACTAGTAGTGGAAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTACATGGCTCAATCTCCTATTTGGCGTGGTGATGGTCCTCTAGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTGATATACATAATTTTATTTAGGTTATGA 216 0.3843 MPIALTRRDLLGCAETSSGKTAAFTIPMIQHYMAQSPIWRGDGPLALVLAPTRELAQQIEKEVIYIILFRL* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1956 71 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 71 IPR014001 -
Amo11g1956 71 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 1 63 - -
Amo11g1956 71 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 63 - -
Amo11g1956 71 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 65 IPR027417 -
Amo11g1956 71 Pfam DEAD/DEAH box helicase 2 65 IPR011545 GO:0003676|GO:0005524
Amo11g1956 71 Gene3D - 1 67 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1956 Amo-Chr11 103177381 103177712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1956 9 61 Eukaryotic Initiation Factors Gene Family AT1G72730 44.643 8.10e-06 39.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1956 K12823 - aip:110268207 128.642