Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1953 ATGCAGTGCCTCACCACAACAACAACCACCTCTCATCCCTCAAATCCTTCTTCATCCCCTCCTCCTCCGCCCAAAATTGTTGATGGTGTTTGGAAAGACATAATCCTAACCCATTCTCGCAGAGACCCACCTCACCATAATCAGCACTCTTTCGAGGAAATGACTCTTGAGGCTATCCTCTCAAAAAACGCTGTGCCCGCCGTTGAAGGCTCATCCTCCTCTGCAGCTGCTAGGTCCAGGGAATGCAAACAGTATCCAATTGTGAAAATCGGTACAAAAGATCAATCTTTTATTGACTCCGTTACGGGATATGAAGACAAGGTTGTGCCCTCTCAAATTCAGAGATTTGTTTCAAGAAATATGCCATGGATAAATTACCATGAAGTTTCAGATGGTGGACATTTGTTTATCCATTATAGTGGCATTTTGGAGATTGAAACAAAAGCTCAGAAAAAAGAAAACATGTCAAGATTAATCTATGCCGAGTTTGAACTTGGCACTGGTGGATTCTCCGAGGCCAACTTCCTGGCTGAGGGGGGATTTGGATCCGTTCACAGAGGGGTTCTACCAGATGGACAAGTCGTTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGAGACAGCGAGAACCATTAGAATGGGCTGCACGGCAAAAAATTGCCATTGGAGCTGCTCGTGGGTTACGATATCTTCATGAAGAGTGTAGAGTGGGATGCATTATCCACCGTGACATGCGGCCTAACAACATTTGA 906 0.4437 MQCLTTTTTTSHPSNPSSSPPPPPKIVDGVWKDIILTHSRRDPPHHNQHSFEEMTLEAILSKNAVPAVEGSSSSAAARSRECKQYPIVKIGTKDQSFIDSVTGYEDKVVPSQIQRFVSRNMPWINYHEVSDGGHLFIHYSGILEIETKAQKKENMSRLIYAEFELGTGGFSEANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWAARQKIAIGAARGLRYLHEECRVGCIIHRDMRPNNI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1953 301 SMART tyrkin_6 170 301 IPR020635 GO:0004713|GO:0006468
Amo11g1953 301 Pfam Protein tyrosine and serine/threonine kinase 175 301 IPR001245 GO:0004672|GO:0006468
Amo11g1953 301 ProSiteProfiles Protein kinase domain profile. 170 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1953 301 SUPERFAMILY Protein kinase-like (PK-like) 156 301 IPR011009 -
Amo11g1953 301 PANTHER OS01G0253100 PROTEIN 156 301 IPR045271 GO:0004714|GO:0006468
Amo11g1953 301 MobiDBLite consensus disorder prediction 1 27 - -
Amo11g1953 301 PANTHER OS01G0602800 PROTEIN 156 301 - -
Amo11g1953 301 Gene3D Phosphorylase Kinase; domain 1 139 245 - -
Amo11g1953 301 Gene3D Transferase(Phosphotransferase) domain 1 247 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1953 Amo-Chr11 102808856 102812314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1953 160 301 Trihelix Transcription Factor Family AT1G23540 53.521 7.03e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo11g1953 PK_Tyr_Ser-Thr 7.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1953 - - gmx:100783226 284.263