Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1927 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTCTTCTTCTTATGCATTTCCCTTTTCCTTCCATACCAATACTCCTTCGCCGTCAACCCACAAGGGGAAGCTCTTCTTTCTTGGAAGAGAACCTTAAACGGTTCCTTAGAGGTTCTCAGCAGTTGGGACCGAATTGAACACACTCCATGCACCTGGTTCGGTGTAAGCTGCAACATCAACAACCAAGTAGTTCAATTGGATCTGAGGTATGTGGATTTGTTTGGAAAACTCCCTACGAATTTCACTGCATTGACTTCATTGAACAAACTCATCTTAACCGGAACCAACCTCACGGGCTCTATTCCCAAGGATATTGCCAACCTTCTAGAACTCACCTACTTGGACCTCAGTGACAATGCATTAAGCGGTGAAATTCCAACAGAACTCTGTTACTTGCCGAAACTCCAAGAGCTTCATCTGAACTCCAATGACCTTGTTGGCTCCATTCCGGTGGCGATTGGGAACCTCACCAATCTCCAGAAGCTAACCATTTATGATAACCAACTCAGCGGTGAGATTCCGGCCACCATCGGGAACTTGAAGAGCTTGCGAGTTATCAGAGCCGGTGGGAACAAGAATCTACAAGGTGCTTTACCCGAAGAAATTGGAAACTGTTCCAACTTAGTGAAGCTGGGTTTGGCTGAAACTAGCATCTCTGGTTCTCTTCCTAAAACATTGGGACTACTCAAGAGCCTTGAAACCATTGCCATCTACACTACGCTTCTCTCAGGCGAAATTCCACAAGAACTCGGCGACTGTACTCTCCTCAAGAATGTCTATCTCTATGAAAACTCGCTCACCGGATCCATTCCTAAGGAACTGGGGAAACTCAGCAGCCTTGAGATTCTTCTGCTATGGCAGAACAATCTGGTCGGCACCATTCCCCCGGAGATTGGTAACTGCCTCCAGTTAGCGGTTATCGACGTGTCAATGAACTCAATTACTGGAAGCATACCGGAGAGTTTTGGCAGATTAACGGCGCTAGAGGAGCTTCAGCTGAGCGTAAACCAGATTTCAGGGGAGATTCCTGCAGAGCTTGGTAACTGCCAGCAACTAACTCACGTGGAGATGGATAACAACCTCATAACGGGAACGATACCTTCAGAGTTGGGGAACCTCAAGAACTTGACGCTTCTCTTCCTTTGGCATAACAAACTCGAAGGGAACATACCGTCTTCGCTCTCTAACTGCCGCAACCTTGAGGCCGTTGATCTCTCGCAGAACATGCTGACGGGTCAGATACCTAAGGGGATATTCCAGCTCAGCAATCTCAACAAACTTCTGTTACTCTCTAACAACCTATCCGGAATCATTCCTTCAGAGATTGGTAACTGCTCCTCCCTCATACGCTTCAGAGCCAGTAACAACAAGATCAGAGGTACCATTCCGCCTCAGATTGGCAACTTGAAGAATCTCAACTTCTTGGACCTTGCCAATAACCGTATTTCGGGTGTTATTCCGGACAATATCTCCGGCAGCCGCAATCTCACTTTCTTGGACTTGCATTCCAATTTGATCGCCGGAAGCTTGCCGGAGAGTCTGAGCGAGCTTGTTTCGCTTCAGTTTCTAGATGTTTCTGATAACGTAATCGGAGGGACGTTGATTCCTGCGCTTGGTTCACTCGGTGCGTTGACGAAGCTGGTTTTAGGGAGGAATCGGATCTCCGGTTCGATTCCGAATCAACTTGGTTCTTGCTCAAAGCTTCAGTTGCTGGACCTTGGCAGCAACCAACTCTCCGGAAAAATCCCTGGAAGTCTTGGAAATATTCCATCTCTGGAAATAGCCATGAATCTAAGCCTCAACCAACTCTCCGGCGAGATTCCAAGGGAGTTCTCGAACTTGGCGAAGCTTGGAGTCTTGGACATTTCTCACAATGCCATCACTGGAAATCTCCAATATCTCGCTGGTTTGCAAAATCTCGTGGTGCTTAACGTCTCGCACAACAGATTCTCAGGTCACGTCCCAGACACTCCATTCTTCACGAAACTTCCACTTAGCGTGCTCGAAGGGAACCCCGTGCTGTGCTTCGCCGGTAACCAGTGCTCCGGTAACGGCAACGGTGCCGGGAAGTCGTCGCGTCGGGCAAGGGAGGCACGCGTGGCAATGGTGGTCCTGTTATGCACGGCATGCGCTCTGCTCATGGCGGCGCTATACGTCGTAGTCTCTGCCAAACGAAGAGGGGACCGCGAAATCGACGTCGAAATGGACGGAAAGGATAGCGACGGCACGGACATGGCCCCACCCTGGGAAGTAACACTTTACCAGAAGCTCGACCTGTCGATTTCTGACGTGGCAAAATGCCTGTCCACCAGCAACGTCATCGGGCACGGTCGATCCGGTGTCGTTTACAAGGTGAACATGCCTGGATCTGGGCTGACCATCGCCGTGAAGAAGTTCAAGACGTCGGATAAATTATCGTCGTCTGCGTTCTCGTCGGAGATTGCGACGCTGGCAAGGATACGCCACCGTAACATTGTGCGATTACTTGGTTGGGGCGCAAACCGTAAAACAAAGTTACTGTTTTACGATTATTTACCTAACGGTAACCTGGACACGCTGTTGCATGAGGGATGCACAGGATTAATAGAGTGGGAGACGCGGCTCAAGATAGCACTGGGCGTCGCTGAGGGCGTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGCGACGTTAAAGCCCTCAATATTCTGTTAGGTGACAGGTACGAACCGTGTTTGGCTGATTTCGGATTCGCACGCTTCTTGGAAGAAGATCACCCTTCGTTTTCCGTTAATCCACAGTTCGCAGGTTCTTACGGGTACATTGCTCCTGAGTATGGTTGCATGCTAAAGATAACAGAGAAGAGCGATGTTTACAGCTTTGGGGTGGTCCTGCTAGAGATTCTAACAGGGAAAAGGCCAGTAGATCCATCATTCCGAGAAGGGGAACACGTAATCCAGTGGGTGAGGGAGCACCTTAAGAGCAAGAAAGACCCAATAGAGGTTCTTGATCCCAAGCTACAAGGGCACCCAGACACACAGATTCAGGAGATGCTGCAGGCGCTTGGGATATCTCTACTGTGCACCAGCAACCGGGGGGAGGATCGACCGACAATGAAGGACGTGGCAGCATTATTGAGAGAAATCAGACACGAAGAGGGTCCACCGGCAGGGTGTGATGAGGCCCACAAGCCCATCAAAAGAAACACGGAGGCCTCGTCGTATTCTTCGTCGTCCTTGTCCTCCGCTGTGACCCCGGCTCAGTTATTGCTCCTTCAATCAGGCTCTCATTCCTCGTCCTCCCTTGCATATTCCTCTTCCTCCGTAGCCGCAGGGTACCACTACCCACCAAGGAATCATCAATCATGA 3387 0.4987 MPVNPWTLFFFFFLCISLFLPYQYSFAVNPQGEALLSWKRTLNGSLEVLSSWDRIEHTPCTWFGVSCNINNQVVQLDLRYVDLFGKLPTNFTALTSLNKLILTGTNLTGSIPKDIANLLELTYLDLSDNALSGEIPTELCYLPKLQELHLNSNDLVGSIPVAIGNLTNLQKLTIYDNQLSGEIPATIGNLKSLRVIRAGGNKNLQGALPEEIGNCSNLVKLGLAETSISGSLPKTLGLLKSLETIAIYTTLLSGEIPQELGDCTLLKNVYLYENSLTGSIPKELGKLSSLEILLLWQNNLVGTIPPEIGNCLQLAVIDVSMNSITGSIPESFGRLTALEELQLSVNQISGEIPAELGNCQQLTHVEMDNNLITGTIPSELGNLKNLTLLFLWHNKLEGNIPSSLSNCRNLEAVDLSQNMLTGQIPKGIFQLSNLNKLLLLSNNLSGIIPSEIGNCSSLIRFRASNNKIRGTIPPQIGNLKNLNFLDLANNRISGVIPDNISGSRNLTFLDLHSNLIAGSLPESLSELVSLQFLDVSDNVIGGTLIPALGSLGALTKLVLGRNRISGSIPNQLGSCSKLQLLDLGSNQLSGKIPGSLGNIPSLEIAMNLSLNQLSGEIPREFSNLAKLGVLDISHNAITGNLQYLAGLQNLVVLNVSHNRFSGHVPDTPFFTKLPLSVLEGNPVLCFAGNQCSGNGNGAGKSSRRAREARVAMVVLLCTACALLMAALYVVVSAKRRGDREIDVEMDGKDSDGTDMAPPWEVTLYQKLDLSISDVAKCLSTSNVIGHGRSGVVYKVNMPGSGLTIAVKKFKTSDKLSSSAFSSEIATLARIRHRNIVRLLGWGANRKTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRLKIALGVAEGVAYLHHDCVPAILHRDVKALNILLGDRYEPCLADFGFARFLEEDHPSFSVNPQFAGSYGYIAPEYGCMLKITEKSDVYSFGVVLLEILTGKRPVDPSFREGEHVIQWVREHLKSKKDPIEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRGEDRPTMKDVAALLREIRHEEGPPAGCDEAHKPIKRNTEASSYSSSSLSSAVTPAQLLLLQSGSHSSSSLAYSSSSVAAGYHYPPRNHQS* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1927 1128 SUPERFAMILY L domain-like 606 686 - -
Amo11g1927 1128 MobiDBLite consensus disorder prediction 1059 1074 - -
Amo11g1927 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1073 - -
Amo11g1927 1128 Pfam Protein kinase domain 781 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1927 1128 Gene3D Ribonuclease Inhibitor 200 446 IPR032675 -
Amo11g1927 1128 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Amo11g1927 1128 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Amo11g1927 1128 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Amo11g1927 1128 Gene3D Ribonuclease Inhibitor 27 199 IPR032675 -
Amo11g1927 1128 Gene3D Transferase(Phosphotransferase) domain 1 855 1070 - -
Amo11g1927 1128 PANTHER OS01G0170300 PROTEIN 3 1073 - -
Amo11g1927 1128 SMART LRR_sd22_2 383 412 - -
Amo11g1927 1128 SMART LRR_sd22_2 624 649 - -
Amo11g1927 1128 SMART LRR_sd22_2 575 601 - -
Amo11g1927 1128 SMART LRR_sd22_2 479 502 - -
Amo11g1927 1128 SMART LRR_sd22_2 503 526 - -
Amo11g1927 1128 SMART LRR_sd22_2 118 144 - -
Amo11g1927 1128 SMART LRR_sd22_2 166 192 - -
Amo11g1927 1128 Pfam Leucine Rich Repeat 577 598 IPR001611 GO:0005515
Amo11g1927 1128 SUPERFAMILY Protein kinase-like (PK-like) 766 1052 IPR011009 -
Amo11g1927 1128 SUPERFAMILY RNI-like 269 602 - -
Amo11g1927 1128 MobiDBLite consensus disorder prediction 1104 1128 - -
Amo11g1927 1128 SUPERFAMILY L domain-like 45 370 - -
Amo11g1927 1128 SMART serkin_6 778 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1927 1128 ProSitePatterns Protein kinases ATP-binding region signature. 784 808 IPR017441 GO:0005524
Amo11g1927 1128 Gene3D Phosphorylase Kinase; domain 1 759 854 - -
Amo11g1927 1128 Gene3D Ribonuclease Inhibitor 447 693 IPR032675 -
Amo11g1927 1128 MobiDBLite consensus disorder prediction 1059 1085 - -
Amo11g1927 1128 ProSiteProfiles Protein kinase domain profile. 778 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1927 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Amo11g1927 1128 SMART LRR_typ_2 335 359 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 118 142 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 504 527 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 647 680 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 166 190 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 287 311 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 479 503 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 408 431 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 551 575 IPR003591 -
Amo11g1927 1128 SMART LRR_typ_2 383 407 IPR003591 -
Amo11g1927 1128 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1927 Amo-Chr11 101946596 101951142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1927 26 1115 Receptor kinase-like Gene Family AT5G56040 53.273 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo11g1927 Pkinase 6.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1927 - - adu:107493731 2092