Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1874 ATGAAGAACATAAGCCAGATGAAGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTAGTAGAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGA 462 0.4329 MKNISQMKEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATKTLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPISRKNPQLLGVILHLEEEVEKGINIVII* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1874 153 PANTHER RIBOSOMAL PROTEIN L2 19 141 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo11g1874 153 Gene3D - 18 87 IPR014722 -
Amo11g1874 153 PANTHER - 19 141 - -
Amo11g1874 153 SMART Ribosomal_L2_C_2 30 138 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo11g1874 153 Gene3D Ribosomal protein L2, domain 3 88 153 IPR014726 -
Amo11g1874 153 Pfam Ribosomal Proteins L2, C-terminal domain 30 131 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo11g1874 153 SUPERFAMILY Translation proteins SH3-like domain 30 138 IPR008991 -
Amo11g1874 153 ProSitePatterns Ribosomal protein L2 signature. 103 114 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1874 Amo-Chr11 95072979 95073473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1874 30 121 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 39.474 4.23e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1874 K02886 - csin:14412467 232.261