Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1857 CTAGTTAAACGATTTTTCGTGAAAACTCCGGTTCTTACAAATAGAACTTTGTTTATACATGACCAGTTGCTTAATCAACCTGGACCAATTTCCTCTAACATGCAAAATCATGGACAAGCGCCTCAGCTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCTTGGGAGATCTTTGCAAGGAGATGGTGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCACCTTTACGCCCATCTCATCCCCATGCTGATGCTTCATTGATAAGTCAACCTTCACCTGCATATCTTGATTTGAATAGTTCACTAGTGAACCATGGTGTGATCTCGGTAACTAATCCACTCACCAATCCACCCACTGGACTGGATTCCATTGTGACGGAGTTTGATGCAGATATCTTGAAGGTTTGTTATGAAGGTGTAATTAGTGCCTTATATGTTGAGCTTCCTAGACAATGCACGAGCTGCGGTCTCCAATTCAAAAGGCAAGATGAGCATAGTATACATATGAATTGGCACGTGACTAGGAACCGAATGTCAAAATGCCAGAAGTAG 564 0.4202 LVKRFFVKTPVLTNRTLFIHDQLLNQPGPISSNMQNHGQAPQLQFLPPQVPSSTQISLGRSLQGDGGQSLHLHGGTLPPLRPSHPHADASLISQPSPAYLDLNSSLVNHGVISVTNPLTNPPTGLDSIVTEFDADILKVCYEGVISALYVELPRQCTSCGLQFKRQDEHSIHMNWHVTRNRMSKCQK* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1857 187 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 56 187 - -
Amo11g1857 187 MobiDBLite consensus disorder prediction 29 92 - -
Amo11g1857 187 MobiDBLite consensus disorder prediction 29 64 - -
Amo11g1857 187 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Amo11g1857 187 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 187 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1857 Amo-Chr11 93579966 93580653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1857 61 187 C2H2 Transcription Factor Family AT4G04885 47.656 3.46e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g1857 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1857 K14400 - aip:107609120 261.536