Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1827 ATGATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACAAGAATCATTTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACGTAGAACAGCCAGAACATCATGCTAATGACCCTGAACCCGAGCCTGTTATGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCCTTCAGTGCCATTGAAGATACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCGGTCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCATTGAAAAACTCGTCCGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGATGAGTCGCACACACCAGAAAGGAATCAAGATAGTGAGAGTCGTGTCGAACCGGCCGCTAGCAACTCCTCACAACCACCACCTCCRGGAGAACCAGAAGCAAGGCAATGA 576 0.467 MMGSGTNLVTTVIGFGMSATFIVFVCTRIICGRIRGSVESRMMYEIESRIDVEQPEHHANDPEPEPVMLDAIPTLKFNQEAFSAIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHTPERNQDSESRVEPAASNSSQPPPPGEPEARQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1827 191 MobiDBLite consensus disorder prediction 177 191 - -
Amo11g1827 191 PANTHER OS11G0150450 PROTEIN 1 167 - -
Amo11g1827 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Amo11g1827 191 Pfam Ring finger domain 89 132 IPR001841 -
Amo11g1827 191 SUPERFAMILY RING/U-box 79 138 - -
Amo11g1827 191 SMART ring_2 90 131 IPR001841 -
Amo11g1827 191 MobiDBLite consensus disorder prediction 144 191 - -
Amo11g1827 191 PANTHER OS02G0676500 PROTEIN 1 167 - -
Amo11g1827 191 MobiDBLite consensus disorder prediction 144 158 - -
Amo11g1827 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Amo11g1827 191 CDD RING-H2_EL5_like 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1827 Amo-Chr11 91148643 91150871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1827 79 135 C3H Transcription Factor Family AT4G10160 56.140 9.90e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1827 - - ccaj:109802319 340.887