LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g1824	ATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAATCGTCGCAGCGATATCCTCGGTTCTGGACCATTCATGCCGCCTCCTGTTGTAGGTCGTGGTGCTTCGGTCCCCTACGGTGCCCCTCCGGTCCCTTATGGTGCAGGAAGAGGAGCTCCGAATGCCTTCGGGTCCTCGTCGGTAACTTCCTTTACGCCCCCTCCTGGTGGTTTCAATATAGGCCGAGGCGGTGGTGGACTTGGTAATGGCCATGCTGGTGGCAGAAAAGACGGCGGAGGTCGTTACGGTGCTGGTGGAAGAGGTCGCGGAGGTTCTGGTAGAGACGGCGGAACTGGTAGAGGCGGTGGAAGCGGTTTTAGGGGAGGCAGAAGTCATGGTGGTGGAAGAGGAGGAGGAGGTGGTAGACATGGTGGACGGTCATCGAAGGATGAATTGAACAAGATTTCCTTGCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGTGAGGGCCATGTCCGATCAAGAAGTGATGCATTATCGTGCCAGTAGAGAAATAACAGTGCAAGGCCATGATGTGCCGAAACCCATTCGGATGTTCCATGAGGCCAGGTTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCAGAGATTTGATTGGCATTGCGGAGACTGGCTCCGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTGGACTGTCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTCGCAGGGCGGGCAAATATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGACCGCAAATTCGTGACCTTCAAAGGGGTGTAGAGATTGTTATTGCTACACCAGGTCGCCTTATAGATATGCTGGAAGCTCAGCACACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCAAGGCAGTTCCTGCGCAACGCATATAAGGTAATTATTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTGACAGATGCAGAGAAATATAACAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAATTACAAGACAATTGAGGATGGATGGATGGCCAGCTCTATCCATCCATGGTGATAAAAACCAAGCTGAAAGAGACTGGGTTTTGGCTGAGTTTAAGAATGGTAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGGTCAATTTTGATTTTCCTTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGGACTGCGTACACCTTCTTCACGCATGCTAATGCTAAGTATGCGAGGGCTCTGATAAAGATTTTACAAGATGCAGGTCAGGTTGTGAGCCCTGCACTATCTGCATTGGCTCGGTCAGCTGGTTCTGCTCTATTAGGATCCAGAGGAAGCTTTCGATCAAGAGGACGTGGAGGCTTTGGTGGCAACAGAGGTGGAAGATCAGGATCCAATACCATTCCTCTAGGTTCAAAGAGGCCTTGGCATGGTATGTAG	1887	0.4812	MNPYDNRYSDAASYRNRRSDILGSGPFMPPPVVGRGASVPYGAPPVPYGAGRGAPNAFGSSSVTSFTPPPGGFNIGRGGGGLGNGHAGGRKDGGGRYGAGGRGRGGSGRDGGTGRGGGSGFRGGRSHGGGRGGGGGRHGGRSSKDELNKISLPKQDFKNLVPFEKNFYVESPAVRAMSDQEVMHYRASREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPGLSHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNAYKVIIGSPELKANQSINQVVEVVTDAEKYNRLIRLLKEVMDGSRILIFMETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEFKNGRSPIMTATDVAARGLDVKDIKCVVNFDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKYARALIKILQDAGQVVSPALSALARSAGSALLGSRGSFRSRGRGGFGGNRGGRSGSNTIPLGSKRPWHGM*	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo11g1824	628	Pfam	Helicase conserved C-terminal domain	433	543	IPR001650	-
	Amo11g1824	628	CDD	DEADc_DDX5_DDX17	215	409	-	-
	Amo11g1824	628	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	275	564	IPR027417	-
	Amo11g1824	628	Pfam	DEAD/DEAH box helicase	227	397	IPR011545	GO:0003676\|GO:0005524
	Amo11g1824	628	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	234	409	IPR014001	-
	Amo11g1824	628	Gene3D	-	176	415	IPR027417	-
	Amo11g1824	628	CDD	SF2_C_DEAD	422	552	-	-
	Amo11g1824	628	SMART	helicmild6	462	543	IPR001650	-
	Amo11g1824	628	MobiDBLite	consensus disorder prediction	51	151	-	-
	Amo11g1824	628	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	78	614	-	-
	Amo11g1824	628	SMART	ultradead3	222	425	IPR014001	-
	Amo11g1824	628	MobiDBLite	consensus disorder prediction	599	628	-	-
	Amo11g1824	628	MobiDBLite	consensus disorder prediction	1	27	-	-
	Amo11g1824	628	Gene3D	-	416	585	IPR027417	-
	Amo11g1824	628	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	203	231	IPR014014	GO:0003724
	Amo11g1824	628	PANTHER	LD32873P	78	614	-	-
	Amo11g1824	628	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	437	582	IPR001650	-
	Amo11g1824	628	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	355	363	IPR000629	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g1824	Amo-Chr11	90725078	90729112	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g1824	200	581	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.594	1.91e-64	216

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g1824	K12823		-	gmx:100777610	830.091