Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1806 ATGGATGATTCAGTTTCAGATTCTCAGCTGAACCAGAGCGAAGTGGATTTTGAGACTGTATCCAATGACGTTCCTGAGACATTCGGGTGTAGATCAGACAAATTTGGGTGCATTGAAGGAAATTTTGGGTGCATTTATATTGATGACCAGTTTGTTCTCAAGGTTGGGATGACTTTTAGAACTCTTGACGATGCTGCAAAATTCTACAAGGATTATTCAAAGCTTGTAGGTTTTTCTACAAGAGTTCGGTGCACAAATAAGAAGGGAAACGAAATTAAGAATCAATTGATTACATGTACTAGAGAGGAAAAATGGAAATCAAAAATATCTCCGACCGAGAAGACAAATCTCTCAGCTGGTTTAAATTGTGCTGCAAGAATTTATATACACGTATTGAAGGATGTTAGTTTTTGGATCATTTCGAAGGTCGTGTTACATCATTCACATCCTTGCTATCCAGATCAAGCACAGATGCTTAAACAGAACAGGGAACTAAGCCTCTCTGTGCGTCATCTTTATGAAGACCGTCATATATGGGTTCCAATTTATCTGGATCACCACTTCTGGGCTAGGATGAGAAGCACACAAAGGAGCGACAACATGCATTCATTTTTTAACAAGTTTATTACCTGGACCAGCTCGCTTATTCAATTTGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCGGAGAGAGAATTAGATGCTGCAGATTTTCATATGGTGATACCGTGTGCAACAAAATCCTTCATTGAAGCTCAGTTTCAACATGTCACAATTCAAAGGGAGGCGAATTGCATCACAAGATTAATGAACTCCGCTCTAGGCTATTCAGTATATGAAGTTGGAGAACAAGTTTCTAGTTCAACATTCAACAAGTTTGTGGTTACTTACGACTCAGTAGCAGCCCAAGTGAAATGCCAATGCTTATTATTCGAGTCAAGAGGGATATTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAACCCAAGTGTCACCGACATATATATTGGAACAATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCCTTATTGGAGCCAAGAAGCAAGAGATTTGACGAATTGGTGTTTCGTTCACAAAATATTTGCGAATTTGCATCAGAATCAGAGGAGCTGACTGCCATTCTGCACCGTGCATATGATAACGTCATGGTTGAGATGGAAAAACTGAAAGCAAAAGGAAGGGGACATGTTCGTTATCTCATGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGGGTTCGAACCAGAGGACATTGCAAATGCCTCAAGGAAGAAGAAAACGAAAGCTTTAAACAAGTTAAACCTTTTTGATTCTGCATCAGTGGTGCATCCAAATTCCAGCCAATATCAAGAACGTGTTATGAATTATCAGTTTAGGAAACCAGCAGCAGGGGATAATGCTGTTGTTTAT 1488 0.4073 MDDSVSDSQLNQSEVDFETVSNDVPETFGCRSDKFGCIEGNFGCIYIDDQFVLKVGMTFRTLDDAAKFYKDYSKLVGFSTRVRCTNKKGNEIKNQLITCTREEKWKSKISPTEKTNLSAGLNCAARIYIHVLKDVSFWIISKVVLHHSHPCYPDQAQMLKQNRELSLSVRHLYEDRHIWVPIYLDHHFWARMRSTQRSDNMHSFFNKFITWTSSLIQFVKQYDNCLGSREQAERELDAADFHMVIPCATKSFIEAQFQHVTIQREANCITRLMNSALGYSVYEVGEQVSSSTFNKFVVTYDSVAAQVKCQCLLFESRGILCRHALSVLSFERVTQVSPTYILEQWSKKVKRRHTHIKSSHDEPLLEPRSKRFDELVFRSQNICEFASESEELTAILHRAYDNVMVEMEKLKAKGRGHVRYLMKMPTWNPLTSFKALQGFEPEDIANASRKKKTKALNKLNLFDSASVVHPNSSQYQERVMNYQFRKPAAGDNAVVY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1806 496 ProSiteProfiles Zinc finger SWIM-type profile. 296 332 IPR007527 GO:0008270
Amo11g1806 496 PANTHER OS03G0843700 PROTEIN 169 402 - -
Amo11g1806 496 PANTHER OS03G0843700 PROTEIN 39 161 - -
Amo11g1806 496 Pfam FAR1 DNA-binding domain 67 152 IPR004330 -
Amo11g1806 496 Pfam SWIM zinc finger 297 329 IPR007527 GO:0008270
Amo11g1806 496 SMART 26again6 307 334 IPR006564 GO:0008270
Amo11g1806 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 169 402 IPR031052 GO:0006355
Amo11g1806 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 161 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1806 Amo-Chr11 88190203 88203759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g1806 FAR1 7.2e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1806 - - adu:110280503 467.618