Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1797 ATGGGTCGCCATTCTTGCTGTGTAAAGCAGAAACTGAGGAAAGGTTTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACAAGGTTCGGTGTCGGATGCTGGAGCTCCGTTCCAAAACTAGCTGGGCTGCAAAGATGCGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTGAGGCCGGATTTAAAGAGAGGGATGTTCTCTCAGCAGGAGGAGGATCTTATAATCAGTCTCCATGAAATCCTTGGAAACAGGTGGGCTCAGATAGCAGCGCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTCTGGAATTCATGTCTGAAGAAGAAGCTAGTGAAGCAAGGAATTGACCCAGCCACACACAAGCCTCTATCAACTGATGATCAAAAAGAAGAAGAGAGCTGCAGCAAGARAATCATCACGMCGSCAGAGAATTCCAAGATACAAATTCCATTCTCAACGGCCTTGGCCTCATCGCTGAACGATTCYGGTTACTACGCCGGCGATGATAACAGCAATGCCATAACGGAAGCTTCTAGAGACATTTTCATGACGAGTAACAATAATAAGCCAACATTTTTGGACCCTCTATCTTCATTCTATGCTGATTTTCCTCATCAGCCCAATAATTACCATCACCTAGCGCCGGTAACTGCCGTAACTAACTACTGTGGAGGAGGATTCTCTTCAATGCCGAGTCTAACCAATTCAGATCAAGGGGGACACGTGTCAGTCACAGATCAATTCATGAACAGCAATAAGGAGAGTTCAAGCAATAACAGCTCATCAAACATGTACACATCAGTAACAGGGTTCTCATCATCATCACCATGGGACGCTACCGCTGAAAATATTACTAACAAGCTTGTGGAACCGTTTTTTCAGTTTAGTGCTATAAAATGTGAGGATTTATACAAGACCACTTGTTCTTCGTGGGAAGAAGATCAAGAACACACTCACACTAATACTGCTTCTTCTTCCATACATTTCACTACCTATCCGTTAACCTCACTTTCAGAAGATCTAACCGCCGCTAATTTTGATGTCTTCCACCATATATGA 1077 0.4318 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEILGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLVKQGIDPATHKPLSTDDQKEEESCSKXIITXXENSKIQIPFSTALASSLNDSGYYAGDDNSNAITEASRDIFMTSNNNKPTFLDPLSSFYADFPHQPNNYHHLAPVTAVTNYCGGGFSSMPSLTNSDQGGHVSVTDQFMNSNKESSSNNSSSNMYTSVTGFSSSSPWDATAENITNKLVEPFFQFSAIKCEDLYKTTCSSWEEDQEHTHTNTASSSIHFTTYPLTSLSEDLTAANFDVFHHI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1797 358 CDD SANT 70 109 IPR001005 -
Amo11g1797 358 CDD SANT 17 61 IPR001005 -
Amo11g1797 358 PANTHER MYB TRANSCRIPTION FACTOR 1 354 - -
Amo11g1797 358 SMART sant 66 114 IPR001005 -
Amo11g1797 358 SMART sant 13 63 IPR001005 -
Amo11g1797 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo11g1797 358 PANTHER MYB DOMAIN PROTEIN 55 1 354 - -
Amo11g1797 358 Gene3D - 69 144 - -
Amo11g1797 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo11g1797 358 Gene3D - 11 67 - -
Amo11g1797 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo11g1797 358 MobiDBLite consensus disorder prediction 240 268 - -
Amo11g1797 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo11g1797 358 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo11g1797 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo11g1797 358 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1797 Amo-Chr11 86566321 86567636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1797 1 134 MYB Transcription Factor Family AT1G57560 79.104 7.09e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g1797 Myb_DNA-binding 7.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1797 K09422 - gmx:100811140 369.392