Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1785 ATGGCATCGTCATCGTCAAACAACAGCAGCTACGATGTTCCCTGGGTTGAGAAGTACCGACCCTCTAAGGTCTCCGACGTCGTTGGCAACCAAGATGCCGTCTCGCGCCTTCAAGTCATCGCCCGAGACGGCAACATGCCCAATCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACAAGCATACTAGCACTTGCTCATGAGCTTCTTGGTTCCAATTCCAAGGAAGCCGTTCTTGAGCTCAATGCTTCCGATGACCGTGGAATTGATGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGATGAAGCTGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGAGGAGGACAATGGAGATATACTCGAATACTACTCGGTTTGCCCTTGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGCTTGTCTGATGAGGAGATACTCGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAACTTACAAGCAACATACAGTGGATTCCAGTTTGTTAACCAACAAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCATTGCATGTGAAAAATATGGTGCGTAATGTTCTCGAAGGGAATTTTGATGAGGCTTGTTTGGGCCTCAAACAACTATATGACTTAGGATACTCCCCCACAGATATCATCACAACAATTTTCCGTATTATAAAAAATTATGATATGGCTGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGGTTGGTTCCTATCTTCAAATGTGTGGTCTATTGGCCAAGCTTTCTCTAGTTCGTGAAACAGCTAAAGCTGCATGA 996 0.4548 MASSSSNNSSYDVPWVEKYRPSKVSDVVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKAA* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1785 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524|GO:0016887
Amo11g1785 331 Gene3D - 6 170 IPR027417 -
Amo11g1785 331 CDD HLD_clamp_RFC 170 232 - -
Amo11g1785 331 Gene3D - 235 327 - -
Amo11g1785 331 Gene3D - 171 234 - -
Amo11g1785 331 SMART AAA_5 45 177 IPR003593 -
Amo11g1785 331 CDD AAA 28 165 - -
Amo11g1785 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Amo11g1785 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 329 - -
Amo11g1785 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Amo11g1785 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Amo11g1785 331 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1785 Amo-Chr11 85493661 85497439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1785 11 330 Core DNA Replication Machinery Family AT1G63160 91.250 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1785 K10755 - gmx:100781364 613.224