Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1774 ATGGTGAGGGGGAAGACACAGATGAAGCGCATAGAGAACGAGACAAGTAGGCAAGTAACGTTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGGCTTTTGAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTGGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATTGAGAAGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGTGGCTTGAACAGCAACGGTCTTTAAGCAAACAAGGCGTGTTGCTTGTCGGAGAAAGGCGGCCGGCAGTGGAAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGTGGTGGAGACAGAGTTGGAGTTGTTCATAGGGCTACCCGAGAGAAGAATGCCTTAA 675 0.4326 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIEKLKEQEKCLLEENRKLKEKWLEQQRSLSKQGVLLVGERRPAVEEEEEEEEEEEEVVETELELFIGLPERRMP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1774 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 PANTHER MADS-BOX PROTEIN SOC1 1 219 - -
Amo11g1774 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Amo11g1774 224 Pfam K-box region 96 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g1774 224 Coils Coil 122 171 - -
Amo11g1774 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 Coils Coil 193 214 - -
Amo11g1774 224 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Amo11g1774 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g1774 224 PANTHER MADS BOX PROTEIN 1 219 - -
Amo11g1774 224 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Amo11g1774 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo11g1774 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1774 Amo-Chr11 83907167 83917285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1774 1 222 MADS-box Gene Family AT4G22950 58.108 3.14e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo11g1774 K-box 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1774 - - ahf:112805426 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1774 11 83907167 83917285 Amo11g1774 11 83907167 83917285 ECH
Amo01g2188 01 68187671 68205655 Amo11g1774 11 83907167 83917285 hybridization