Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1716 ATGGAAGAAGCGTTTAGGCGTCTCAACGGCATGCCTCCGATCCAAGAACCCGACCCGATACAAGACTCAACCATCGCCGACCACCAGAAGAAAACCAACAACAAGAGGATGGCCAAGGACGCCGGTGGCGGCGGCGGCGGCTCTGCCGCGGGGCCAATGAGGTACCGCGGCGTCAGGCGGAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCGGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCCTGCGCCTACGACTGTGCCGCCAGAGCGATGCGAGGCGCGAAGGCAAGGACGAACTTCGTGTACCCTGATTCTCCTCCTCATCCTCATCCACACCATCACCATCACAATTTTCGTCACTCTGAACTGTTCGAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAGCGGCCGCCATGGCGTAACTGCTCCATTATCGACTCAGCAGCAGCACCGAAACATCGCTAACAATTCTCATCATTCCCTGAACATGCTTTTGTTCCGCGAGTTTCTGAATTCGAATCCGTGTTTGGTTTCTTCTTCTGCTGCTGCTGCTGGTGGTGTTGGTTCTAGTGGTGCTAATAATAGTCCTTATCAGTATTGCATGAAGGAGGGTGGTTCGGCTTGCTGCTTCAATGGTAACTGTTGCGGTGGTGGTTCCAACAACGGCACGACGGATGTTATTGTTGAAGGTGTCGAGGAAGAAGATCAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAAACTCTGGTCTGTTGGAAGAGATAGTTCAACGCTTCTTGCCGAAATCCAAAACCGTTCCAAACAAGAATTGCGACAGCACTTTGAAGCTGAAACCCGAGGCYGCGGCAGTTTCGTTTCCTCATCATCAACAACAACAACAACAGGGSTATGATGATGACAGCAGGATGATGAGGGGTTTTGATCATCAAAATTTTCCTGTTCAGCAATTTGATTATGGCTTTAACCCTATTCATGAGGCCTCATCGATGACCATGCCTGTGGGGAACGAACAGTTGATGATGAACCCTACTGCTATGCTGGAAGATGCTTTTCAGTATCAACAATTTCTGAATGCCTTTGCGGCCAGAATGCAGAATGCTTAA 1155 0.5186 MEEAFRRLNGMPPIQEPDPIQDSTIADHQKKTNNKRMAKDAGGGGGGSAAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDSPPHPHPHHHHHNFRHSELFEAFNFPKQQCHVSKLVQSGRHGVTAPLSTQQQHRNIANNSHHSLNMLLFREFLNSNPCLVSSSAAAAGGVGSSGANNSPYQYCMKEGGSACCFNGNCCGGGSNNGTTDVIVEGVEEEDQSLLELFPRESSNSGLLEEIVQRFLPKSKTVPNKNCDSTLKLKPEAAAVSFPHHQQQQQQGYDDDSRMMRGFDHQNFPVQQFDYGFNPIHEASSMTMPVGNEQLMMNPTAMLEDAFQYQQFLNAFAARMQNA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1716 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 190 - -
Amo11g1716 384 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Amo11g1716 384 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Amo11g1716 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 190 - -
Amo11g1716 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 249 384 - -
Amo11g1716 384 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
Amo11g1716 384 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Amo11g1716 384 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Amo11g1716 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 249 384 - -
Amo11g1716 384 MobiDBLite consensus disorder prediction 23 37 - -
Amo11g1716 384 MobiDBLite consensus disorder prediction 1 54 - -
Amo11g1716 384 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Amo11g1716 384 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Amo11g1716 384 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1716 Amo-Chr11 77089751 77090905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1716 1 281 AP2-EREBP Transcription Factor Family AT1G12980 36.749 8.15e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo11g1716 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1716 - - ahf:112736058 695.271