Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1709 ATGGGCTTCGCGTATAAATCCCTAAACCCTAATTGCATCCCCTGTGGCCGCTCCATTATCACACACAGAAGCAGCGGCAGCAAACAAGGAGAGAAAATGACGACGAGATTCAAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGCCACGGGCGTATTGGAAAGCACCGGAAGCACCCGGGAGGTCGTGGTAACGCCGGAGGAATGCACCACCACCGCATCCTCTTCGACAAGTACCATCCCGGTTACTTCGGCAAGGTCGGTATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCATTGCCCTATCGTCAACATTGACAAGCTCTGGTCCTTGGTTCCTCAAGAGTTGAAGGATAAGGCCTCCAAGGACGGTACCAAGGCGCCGTTGGTTGACGTTACGCAATTCGGTTACTTCAAGGTTTTGGGGAAGGGGGTTCTTCCTGAGAACCAACCTGTGGTCGTGAAGGCCAAGCTTGTTTCAAAGGTTGCGGAGAAGAAGATCAAGGAGGCTGGTGGTGCTGTTGTTCTCACCGCTTGA 543 0.5341 MGFAYKSLNPNCIPCGRSIITHRSSGSKQGEKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSLVPQELKDKASKDGTKAPLVDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKVAEKKIKEAGGAVVLTA* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1709 180 SUPERFAMILY Ribosomal proteins L15p and L18e 38 179 IPR036227 -
Amo11g1709 180 PANTHER 60S RIBOSOMAL PROTEIN L27A 33 180 - -
Amo11g1709 180 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 33 180 - -
Amo11g1709 180 MobiDBLite consensus disorder prediction 35 66 - -
Amo11g1709 180 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 60 177 IPR021131 -
Amo11g1709 180 Gene3D - 90 180 - -
Amo11g1709 180 ProSitePatterns Ribosomal protein L15 signature. 141 173 IPR001196 GO:0003735|GO:0005840|GO:0006412
Amo11g1709 180 MobiDBLite consensus disorder prediction 23 66 - -
Amo11g1709 180 Hamap 50S ribosomal protein L15 [rplO]. 33 179 IPR030878 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1709 Amo-Chr11 76851958 76853171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1709 33 180 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.486 3.45e-91 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1709 K02900 - csv:101221117 286.574