Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1705 ATGTTTTCCTTTATTTGGTGGGTTGTCGGGTTCTATTGGGTATCAGCTAGTGGTCAAGACTTAACCCAAGAGGCTCCTCTGCTTTATTGGTTATGTATAGTCTTCCTGGGTTTCGATGTTTTCTTTGTCGTTTTCTGCATTGCACTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGCATCATTGCACTTCTATATGCAGTTGCAGACCAGGAAGGGGCATCTAAAGAAGATATTGAGCAGTTGTCGAAATTCAAATTCCAAAGGAATGAAAATAATGAGAAACTCACTGATAATACACAAGTATCTGCTGGGGGAGTAATGATAGAATGCCGAGTTGATTCACCTATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTTGATCTAAGACAACTTCCCTGTGGTCACCATTTTCACTGTGCTTGTGTGGACAAATGGCTATACATTAATGCTACCTGCCCCCTCTGCAAGTATAATATCCTAAAAAGTAGCAGAAGTGCTCAAGAGGAAGTGTAG 561 0.4189 MFSFIWWVVGFYWVSASGQDLTQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRNENNEKLTDNTQVSAGGVMIECRVDSPIEHVLSDEDAECCICLSAYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSRSAQEEV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1705 186 CDD RING-H2_RNF111_like 130 174 - -
Amo11g1705 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 186 - -
Amo11g1705 186 SMART ring_2 131 171 IPR001841 -
Amo11g1705 186 Pfam Ring finger domain 130 172 IPR001841 -
Amo11g1705 186 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Amo11g1705 186 PANTHER TARGET OF ERK KINASE MPK-1 1 186 - -
Amo11g1705 186 SUPERFAMILY RING/U-box 120 177 - -
Amo11g1705 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1705 Amo-Chr11 76323673 76325525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1705 1 179 C3H Transcription Factor Family AT1G68070 58.791 2.17e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1705 - - ahf:112722254 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2160 01 65302191 65306929 Amo11g1705 11 76323673 76325525 hybridization
Amo11g1705 11 76323673 76325525 Amo05g0863 05 10906930 10911153 PCT