Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1665 ATGGCCACTTACACGTTTTCATTATGCCCTCACACCCTCTGTTACCGCCCTTACACCACACGCTCTTCTTCCCTTTCTTGCTCTTTCCCCTCTTCTGCTCTCCCAGATAATGTTGGATCTAAAGTACCGAGAAAACGAATAAGAAGAATAGAAGGTCCGAGAAAGAGCATGGAAGACTCTGTTAAACGTAAGATGGAGCAATTTTATGAGGGATCCGATGGACCACCCATCCGTGTTCTTCCTATTGGTGGATTAGGTGAAATTGGAATGAATTGCATGCTTGTTGGTAACTATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAAAAAATCATACCCGATACAACATTCATAAAAAAATGGAGCCACAAAATTGAGGCAGTTGTTATAACACATGGGCATGAAGATCATATTGGTGCGTTACCTTGGGTCATCCCAGCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTCACAATGGAGCTTATTAAGAAACGCTTGAAGGAACATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTATGGCAGGGCCTTTTGAGATAGATCCAATCACGGTGACCCATTCTATTCCTGATTGCTGTGGTTTAGTACTTCGTTGTTCTGATGGGACTATTCTTCACACCGGGGACTGGAAGATTGATGAAACACCATTAGACGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAGCTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTCGTGGCAGATGCATTGTTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATTACGACTCAGTTTGCATCAAATATACATCGTCTGGGAAGCATCAAAGCTGCTGCTGATTTAACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCGAATTGATCCATCCACTTTGATTAAAGCGGAGGATATTGATGCTTATGCTCCAAAGGATTTGCTAATTGTTACAACAGGCTCCCAAAACCTCGTGCGGCCTTGA 1134 0.4259 MATYTFSLCPHTLCYRPYTTRSSSLSCSFPSSALPDNVGSKVPRKRIRRIEGPRKSMEDSVKRKMEQFYEGSDGPPIRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFMAGPFEIDPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSIKAAADLTGRKLVFVGMSLRTYLDAAWKDGKARIDPSTLIKAEDIDAYAPKDLLIVTTGSQNLVRP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1665 377 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Amo11g1665 377 PANTHER RIBONUCLEASE J 5 373 - -
Amo11g1665 377 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 5 373 - -
Amo11g1665 377 SMART Lactamase_B_5a 89 286 IPR001279 -
Amo11g1665 377 Gene3D - 62 298 IPR036866 -
Amo11g1665 377 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 372 IPR036866 -
Amo11g1665 377 CDD RNaseJ_MBL-fold 80 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1665 Amo-Chr11 72461767 72466187 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1665 - - gmx:100814619 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2115 01 62626409 62634909 Amo11g1665 11 72461767 72466187 hybridization
Amo11g1665 11 72461767 72466187 Amo08g2472 08 38512974 38520657 PCT
Amo08g2472 08 38512974 38520657 Amo11g1665 11 72461767 72466187 PCT