Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1664 ATGCTAAACCGCATATCAGAAATTGGATCAACAATAGTTATGGGGAAGAATGAATGTCTGCACACGTCTGGTCATGGGTATCGCGGAGAATTGGAAGAAGTACTTAGAATTGTGAAACCACAGCATTTTCTTCCCATACATGGGGAACTCTTGTTCTTGAAAGAACATGAATTGCTTGGAAAGTCCACTGGCATTCGACACACCACTGTTGTTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGCTTCATTTCACTTGGAACAGAAAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCGAATGATCTCCTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTCCGTCCTCAAAATCTAGATGATCAAGTTGGAAACACATTGAAAGGCAAGATAAGAATTACTACAAGATGCCTGTGGCTTGACCAAGGGAAGCTGATGGATTCACTTCATAAAGCTGCGAATGCTGCCCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGCTGAGGAAAATGGTGAGGAAGTACAGTGGAAAGCGGCCTGAAGTTATTGCCATTGCTGTAGAAAATCCTGCAGCTGTTATTGAAGATGAGATAAAGACAAAGTTGTCTGGCAAAGCCCATGTGGACGGGATATCAACATGGAGAAGAGTGTTGGATGGGCATGGGAAGGAAAATAACTCCACCAAAATGCCAATTAGAGGTGTTGAAGGATTAGCATCTGAAGAATACACTACCACCTCAAGTGGAGATGATGATGATATTTCTGAAACAGAGGATCAAGATGAATTTTGGAAGTCATTCGTCGATTCATCGTCAGCTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTCCTCAAAAGGAGAATAAGCCCCAACTGAAGAAAGATAGTTCTGAAGAGTCTGAAGAAGAAATGTCCGAAAAGACATCAAATTTAGAATCCAAATATTCAAAATCTGCAAAGAGAAATAAATGGAAACCTGAGGAAATTAAGAAGCTGATTGATATGCGGGGTGAACTACATGATCGATTCCAAGTAGTAAAGGGGAGGATGGCCCTTTGGGAAGAAGTATCTCGGAACTTGTCGGCAAATGGGATCAGCAGAAGTCCTGGGCAGTGCAAATCTCTATGGACATCTTTGTTACAGAAATATGAGGAGGTCAAGAATGAGAAGAATACCAAGAAAAAGTGGTCATATCTTGAGGACATGGAGAGGATTCTATCTGAAAATGAGGAACTGGCAACAAAATGA 1350 0.4067 MLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVVKNGEMLGVSHLRNRRVLSNGFISLGTENLQLKYSDGDKAFGTSNDLLIDERMRIALDGIIVVSMEIFRPQNLDDQVGNTLKGKIRITTRCLWLDQGKLMDSLHKAANAALSSCPVNCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIAVENPAAVIEDEIKTKLSGKAHVDGISTWRRVLDGHGKENNSTKMPIRGVEGLASEEYTTTSSGDDDDISETEDQDEFWKSFVDSSSAEKSIKANNGYVPQKENKPQLKKDSSEESEEEMSEKTSNLESKYSKSAKRNKWKPEEIKKLIDMRGELHDRFQVVKGRMALWEEVSRNLSANGISRSPGQCKSLWTSLLQKYEEVKNEKNTKKKWSYLEDMERILSENEELATK* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1664 449 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 19 61 IPR011108 -
Amo11g1664 449 Gene3D - 1 14 IPR042173 -
Amo11g1664 449 MobiDBLite consensus disorder prediction 252 294 - -
Amo11g1664 449 CDD GT1 356 421 - -
Amo11g1664 449 SMART sant 354 416 IPR001005 -
Amo11g1664 449 Pfam Myb/SANT-like DNA-binding domain 355 439 IPR044822 -
Amo11g1664 449 MobiDBLite consensus disorder prediction 309 354 - -
Amo11g1664 449 SUPERFAMILY Metallo-hydrolase/oxidoreductase 8 77 IPR036866 -
Amo11g1664 449 Gene3D - 358 419 - -
Amo11g1664 449 Gene3D - 115 221 - -
Amo11g1664 449 PANTHER RIBONUCLEASE J 1 449 - -
Amo11g1664 449 Gene3D - 15 79 IPR036866 -
Amo11g1664 449 ProSiteProfiles Myb-like domain profile. 350 414 IPR001005 -
Amo11g1664 449 MobiDBLite consensus disorder prediction 322 354 - -
Amo11g1664 449 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1664 Amo-Chr11 72458451 72461392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1664 341 441 Trihelix Transcription Factor Family AT2G38250 29.126 4.22e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo11g1664 Myb_DNA-bind_4 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1664 - - gmx:100814619 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1664 11 72458451 72461392 Amo11g1664 11 72458451 72461392 ECH