Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1618 ATGGAATCTAACTCAGACATGTTCAGGGTACCTTCTGCAGGAGGAGGAGGAGGAGGAGGAACGGGACCATCGCCTTCGTCTTCGTCTTCGTCTTCCTCTTTGGTTTCTTCGTCGTCTTCGTCATTGTCGTCTTCGAATTCTAGAAGGTTCGGAACTATTTCTCCCTCTAACATCATTAACGCACCGCTGTCGCTATTATTGGAATATTCAGGGATTCTTCGCAACAATAACAACACCACCACCACCAGGTCGAATTTCAATAACCAAGAACCTAACCCTAACCCTAATTCCGAGCCTTCCGTAAATGACGGCGAGTTATCGATCAGGATCATTAGTCCTTCCGAACACGATAATCACGATAATCATCGTCACAGGGAGGAGCAACCTTCGTCTTCTGGTGGGGGTGGTTTGGTTGTGGGGCTTCCTCACGATGAGGGTGGGTCCGTTATGCCCAATTCGAGCACCGGAGACACCGGGATTGGGAACGGGAATGGGATTGGAAACGGCGACTCGGGGACCGGCGGCGAGGGTGGCGGCAATGGGAGGGATTCTTCTTACCAGAGGTATGATATTCAGCATGCTGCAAGGTGGGTGGAGCAGGTTCTTCCGTTCTCCTTGCTCCTCTTGGTGGTCTTCATCCGCCAGCATTTACAAGGGTTTTTTGTTACAATTTGGATTGCGGCTGTCCTTTTCAAGTCGAATGACATTCTAAGAAAACAAACAGCTCTGAAGGGAGAGAGGAAAATACCTATTCTCATTGGGATTTCTGTTGCATTTTCACTTCATGTGATTAGCATCTATTGGTGGTATCAGAATGATGATCTGATGTATCCGCTGGTTATGCTTCCTCCGAGAGAGATACCGCCTTTCTGGCATGCAATTTTCATCATCATGGTTAATGACACTTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATCTATTACAAGAACAGCAGAGGCCGAAATTATCGTAGGCAGGGGCAAATGCTGACTCTAGTTGAGTACCTTCTTTTGCTATACCGTGCCTTGCTGCCGACACCGGTTTGGTATCGTTTCTTTCTAAACAAAGAATATGGAAGCCTGTTTTCATCATTGATGACAGGACTGTATCTGACATTTAAGCTCACATCCGTGGTTGAAAAGGTGCAAGCCTTCTTTGCTTCAGTGAAGGCATTGTCACGGAAAGAAGTGCATTATGGTTCTTATGCAACATCAGAGCAGGTGATTGCGGCTGGTGATCTTTGTGCTATTTGTCAAGAGAAGATGCATGCTCCAATATTACTTCGTTGTAAACACATCTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACTTGAGGTCATTTGGTGATGGTTCTACTAGTTTATTCTTCCAGTTATTCTAA 1443 0.4622 MESNSDMFRVPSAGGGGGGGTGPSPSSSSSSSSLVSSSSSSLSSSNSRRFGTISPSNIINAPLSLLLEYSGILRNNNNTTTTRSNFNNQEPNPNPNSEPSVNDGELSIRIISPSEHDNHDNHRHREEQPSSSGGGGLVVGLPHDEGGSVMPNSSTGDTGIGNGNGIGNGDSGTGGEGGGNGRDSSYQRYDIQHAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPILIGISVAFSLHVISIYWWYQNDDLMYPLVMLPPREIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQAFFASVKALSRKEVHYGSYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1618 480 MobiDBLite consensus disorder prediction 21 55 - -
Amo11g1618 480 MobiDBLite consensus disorder prediction 78 184 - -
Amo11g1618 480 ProSitePatterns Zinc finger RING-type signature. 434 443 IPR017907 -
Amo11g1618 480 ProSiteProfiles Zinc finger RING-type profile. 419 457 IPR001841 -
Amo11g1618 480 MobiDBLite consensus disorder prediction 148 169 - -
Amo11g1618 480 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Amo11g1618 480 SMART ring_2 419 456 IPR001841 -
Amo11g1618 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 467 IPR013083 -
Amo11g1618 480 MobiDBLite consensus disorder prediction 1 55 - -
Amo11g1618 480 MobiDBLite consensus disorder prediction 78 103 - -
Amo11g1618 480 SUPERFAMILY RING/U-box 410 462 - -
Amo11g1618 480 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 480 - -
Amo11g1618 480 CDD RING-HC_RNFT1_like 418 457 - -
Amo11g1618 480 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 28 480 IPR044235 GO:0061630|GO:1904294
Amo11g1618 480 MobiDBLite consensus disorder prediction 110 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1618 Amo-Chr11 69442633 69447460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1618 48 480 C3H Transcription Factor Family AT5G01960 67.120 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1618 - K22379 aip:107639742 775.393