Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1611 ATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGTAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCAGATGGTATTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGACTTTGTGCAGTTTGCATGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATCGGTGGCAGGACAATCAAGGACAAATTTGGGGTAAGGTCTCCGAGACATAGCTCTGCAGAAATGATGGCAGCCCTTTACCTACAAAGTGTTCGAAGGGTGTGTCAGGCTCGGAGGGGATGTCAGTATGCCCAGTCCTCATCATTAGCTTCAGATGCTCATAGCATCGCTTGTTGCAATGATCTGACTGCTCAATACGCCGCTGAGTGCGGCGCTCCATCTGATCGATGCGCTCAAAGAGACGGTACACTAGATGGTAGACGGGCTGGGAAGCGGAAGATGGTGCTGTGGGTGCGGGAGGTGTAG 657 0.484 MSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGVARRLYVGNLHFNMTETDLQMVFEAFGQVELVQLPLDESGNCKGFDFVQFACLEDARNAQSLNGQLEIGGRTIKDKFGVRSPRHSSAEMMAALYLQSVRRVCQARRGCQYAQSSSLASDAHSIACCNDLTAQYAAECGAPSDRCAQRDGTLDGRRAGKRKMVLWVREV* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1611 218 PANTHER CC1-LIKE SPLICING FACTOR 1 124 - -
Amo11g1611 218 Gene3D - 32 138 IPR012677 -
Amo11g1611 218 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 124 - -
Amo11g1611 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Amo11g1611 218 SMART rrm1_1 54 126 IPR000504 GO:0003723
Amo11g1611 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 130 IPR000504 GO:0003723
Amo11g1611 218 SUPERFAMILY RNA-binding domain, RBD 53 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1611 Amo-Chr11 68551300 68554757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1611 55 123 Eukaryotic Initiation Factors Gene Family AT3G16380 40.000 5.89e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1611 K13091 - ahf:112721449 284.648