LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g1596	ATGTCACGCTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGACTTTACCTGGACTAACTAGTAAAAAGCCTACAGTCGGAAGCGAATTTAAAAACCAATCACGCTCCGGTAAAAAATCGCAATATTGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGCCAATTGCTTAAATACATTCGTATCGCCAGAAAAGCCAAGGGGTCAACCGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTAGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAAACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAACCTCAAGATATTATTACAGCGAAAGATGAACATAAATCGAAAGCTCTGATTCAAAATTCTCTGGATTCAGCCCCACGTGAGGAATTGCCAAACCATTTAACCCTTCATCCATTCCAATATAAAGGATTAGTAAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATCAACGAATTGCTGGGTGTAGAATATTATTCTCGTCAGACTTAA	606	0.3746	MSRYRGPRFKKIRRLGTLPGLTSKKPTVGSEFKNQSRSGKKSQYCIRLEEKQKLRFHYGLTERQLLKYIRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHKHVLVNGRIVDIPSYRCKPQDIITAKDEHKSKALIQNSLDSAPREELPNHLTLHPFQYKGLVNQIIDSQWVGLKINELLGVEYYSRQT*	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo11g1596	201	Pfam	Ribosomal protein S4/S9 N-terminal domain	3	88	IPR001912	GO:0019843
	Amo11g1596	201	CDD	S4	89	137	-	-
	Amo11g1596	201	ProSitePatterns	Ribosomal protein S4 signature.	87	111	IPR018079	GO:0019843
	Amo11g1596	201	PANTHER	30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC	1	200	-	-
	Amo11g1596	201	TIGRFAM	rpsD_bact: ribosomal protein uS4	3	199	IPR005709	GO:0003735\|GO:0006412\|GO:0015935
	Amo11g1596	201	MobiDBLite	consensus disorder prediction	15	36	-	-
	Amo11g1596	201	Pfam	S4 domain	89	136	IPR002942	GO:0003723
	Amo11g1596	201	Gene3D	-	88	184	IPR036986	GO:0003723
	Amo11g1596	201	SMART	Ribosomal_S4_2	3	88	IPR001912	GO:0019843
	Amo11g1596	201	ProSiteProfiles	S4 RNA-binding domain profile.	89	149	-	-
	Amo11g1596	201	PANTHER	30S 40S RIBOSOMAL PROTEIN	1	200	IPR022801	-
	Amo11g1596	201	Gene3D	Ribosomal Protein S4 Delta 41; Chain A, domain 1	3	199	-	-
	Amo11g1596	201	Hamap	30S ribosomal protein S4 [rpsD].	1	199	IPR005709	GO:0003735\|GO:0006412\|GO:0015935
	Amo11g1596	201	SUPERFAMILY	Alpha-L RNA-binding motif	3	199	-	-
	Amo11g1596	201	SMART	s4_6	89	153	IPR002942	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g1596	Amo-Chr11	67554874	67555479	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g1596	86	128	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	44.186	5.81e-06	43.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g1596	K02986		-	gmx:3989263	363.614