Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1563 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTCCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTAAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTTGTGATGAGGGTTTTAAAGGTGGTGGTGGTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGATGGGTTAGTTAATGGATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGATGAGAAGAGGGAAGAGAAAAATGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCCATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGTGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGATCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGGGAAAGAGAGAATGTCCTTATTACATGCGCACCGGCTCATGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGTATAGTAATGGAGGATCTATTTCATTACATGGTGTATCACAACAGTCTGTGTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCACCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAAGTTGATGATTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCGTGCATGCATTACACACGATATGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCACCCCATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1506 0.4509 MEHTESDSASSSLPNGGGDSITATQQDPQLAPSSNHGTDDPQPSDLYQTAKDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGCDEGFKGGGGDGDNWGWETNSWEEENVNVGLVDGDYDGLVNGYVDADGGDDVDGDEKREEKNGGGRAQHQYPWRPDAQDCAFYMKTGNCKFGINCKFNHPINRRKNQAVKEWPAEREEEQAERSGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLGKRECPYYMRTGSCKFGANCKFNHPDPTTVGGSESSPGYSNGGSISLHGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQVDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1563 501 MobiDBLite consensus disorder prediction 149 178 - -
Amo11g1563 501 SUPERFAMILY CCCH zinc finger 278 304 IPR036855 GO:0046872
Amo11g1563 501 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Amo11g1563 501 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 24 484 - -
Amo11g1563 501 Gene3D - 400 482 - -
Amo11g1563 501 Gene3D - 221 308 - -
Amo11g1563 501 SUPERFAMILY CCCH zinc finger 412 437 IPR036855 GO:0046872
Amo11g1563 501 PANTHER PROTEIN PHOSPHATASE RELATED 24 484 - -
Amo11g1563 501 ProSiteProfiles Zinc finger C3H1-type profile. 453 481 IPR000571 GO:0046872
Amo11g1563 501 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Amo11g1563 501 Gene3D - 156 220 - -
Amo11g1563 501 ProSiteProfiles Zinc finger C3H1-type profile. 407 435 IPR000571 GO:0046872
Amo11g1563 501 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Amo11g1563 501 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Amo11g1563 501 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Amo11g1563 501 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Amo11g1563 501 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Amo11g1563 501 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Amo11g1563 501 SMART c3hfinal6 454 480 IPR000571 GO:0046872
Amo11g1563 501 SMART c3hfinal6 407 434 IPR000571 GO:0046872
Amo11g1563 501 MobiDBLite consensus disorder prediction 7 56 - -
Amo11g1563 501 MobiDBLite consensus disorder prediction 1 98 - -
Amo11g1563 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 255 IPR000571 GO:0046872
Amo11g1563 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 479 IPR000571 GO:0046872
Amo11g1563 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Amo11g1563 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 303 IPR000571 GO:0046872
Amo11g1563 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 409 434 IPR000571 GO:0046872
Amo11g1563 501 SUPERFAMILY CCCH zinc finger 455 482 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1563 Amo-Chr11 65543523 65547499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1563 178 481 C2H2 Transcription Factor Family AT3G02830 40.867 1.48e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo11g1563 zf-CCCH 1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1563 - - adu:107491206 875.159