Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1562 ATGGGAAATCTGCAAACAAAATGGGCAGCGAGTACAGTCCAACCCTCTGAGTCCAATTCAGCTTCTTCTTCTTCTTCTTTGTTTACCAATGGCAGTGGTCAACAACATCCACCACAGCCACCACGGGCTCCTCTTTCTTCTCCCTCTGATCACCATCAAACGTCCCAGGAAGGTGCCCTCTGCGGGGACCTTAAGGGCAAACTAGAATTGAAGGGTGAAGGGCGAGTGGGTGTTGAAACTCTGGATCAAGTTTTAAACTTTGGTCAACAGGGTGTTAATGGTGATGATCGGGATATTGAGGGCTCGGAGAGAAATAGTTGGGAAGATGATTATGTGAATGAAAGTGTTTATGATGGCAACTGCGTTGGAGCTGAGAAGAGAAAAAAGAGAGGCGCTGGTCGGAAAACAAAGGTTGCTAAGGAGCAGTCACAAGAAAGACAAGAACCATCAGAAAGATCCGGCCAAACAGAATGCAAGTATTATCCATCACTACCAGCTGCAGAACTGAACTTTCTTGACCTGCCTATCCGTCCGGGAGAGAAAGATTGTGCCTATTACATGCAACATGGGTCATGTAAGTTTGGAGAAAACTGCAAGTATAATCATCCTAACCCGACAACTGGAGGATGCGATCCTCCTCCTATGTATGATAATGTAGGATCTATTTCATTTAGTGGTGTACTGCAACAGTCTGCATCATCAGGCTCTTCTCCAGGAACAGTAAACAAAACTTCTCCTTTTCTGCCGATGATGCTTTTGCCTACTCAAGTTTCTCCTCAAGATTCTGATTGGAATGCATATCATTATCAGGCACCTATATGCCCATGTGTGATGAGTATGCATCCACCTACACATGTCAAGAGCTACCCAGCTATCGAAACAAACGCTTATACGCCCCAACAAAATCAGATCCAAGTTGGAGTTGATGAGTTTGCAGAAATACCTGGGGATTCTAAGCCTAAATCCAAACGTAAATCTCGCTGTAAGAAGAATAAACTTGCAAGTTTACCTCCATGCAATCTCAATGGCAAGGGCCTACTTTTGAGACCGGCACCGATCTGCCCATCTACGATGAGTATGCATCCACCTAAATATGTCATGAACAACTCAACAATCAAAACAAATGCTTATACGCCCCGACAAAAGCAGATCCAAGACGGAGTTGATGAGTTTGCAAAAATACCTGAAGATTCTAAGTCTAAATCCAAAGGTAAATCTCGCCGTCAGAAGAATAAGCTTGCAAATTTACCTCCAAGCACTCTCAATGACAAGGGCCTGCTTTTGAGACCTGCACCTATCAAGCCATCTGTGATGGGTATGCATCCACCTACACATGTCATGAATAACCCAGCAATCAAAACAAAAGCTTCTACGCCCCGACAAAAGCAGATGCAAGTTGGAGTTGATGAGCTTGCAGAAATACCTGGGGATTCCAAGTCTAAATCCAAACGTAAATCTCACCGTCAGAAGAATAAGCTTGCAAGTGTACCTCCATGCACTCTCAATGACAAGGGCCTGCCTCTGAAACCTGACAAGAGTGCATGCCCCGAATACATTTGCCTCGGAATATGCAAGTTTGGAGCATGTTGTAAGTTTGACCACCCATCAAACCCTCCACCGTCGTTGACAATCCATTCAGTTTATCAGCAATCCTACACAAACTCAGCTGGTGTTGAGGTGGCTTGGATGGGTTCAAGTGATCCCACAATTCAGCAAACTCTGTAA 1725 0.4464 MGNLQTKWAASTVQPSESNSASSSSSLFTNGSGQQHPPQPPRAPLSSPSDHHQTSQEGALCGDLKGKLELKGEGRVGVETLDQVLNFGQQGVNGDDRDIEGSERNSWEDDYVNESVYDGNCVGAEKRKKRGAGRKTKVAKEQSQERQEPSERSGQTECKYYPSLPAAELNFLDLPIRPGEKDCAYYMQHGSCKFGENCKYNHPNPTTGGCDPPPMYDNVGSISFSGVLQQSASSGSSPGTVNKTSPFLPMMLLPTQVSPQDSDWNAYHYQAPICPCVMSMHPPTHVKSYPAIETNAYTPQQNQIQVGVDEFAEIPGDSKPKSKRKSRCKKNKLASLPPCNLNGKGLLLRPAPICPSTMSMHPPKYVMNNSTIKTNAYTPRQKQIQDGVDEFAKIPEDSKSKSKGKSRRQKNKLANLPPSTLNDKGLLLRPAPIKPSVMGMHPPTHVMNNPAIKTKASTPRQKQMQVGVDELAEIPGDSKSKSKRKSHRQKNKLASVPPCTLNDKGLPLKPDKSACPEYICLGICKFGACCKFDHPSNPPPSLTIHSVYQQSYTNSAGVEVAWMGSSDPTIQQTL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1562 574 MobiDBLite consensus disorder prediction 127 157 - -
Amo11g1562 574 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
Amo11g1562 574 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Amo11g1562 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 164 352 - -
Amo11g1562 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 128 161 - -
Amo11g1562 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 439 573 - -
Amo11g1562 574 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 356 431 - -
Amo11g1562 574 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Amo11g1562 574 SMART c3hfinal6 510 536 IPR000571 GO:0046872
Amo11g1562 574 MobiDBLite consensus disorder prediction 313 334 - -
Amo11g1562 574 Gene3D - 136 208 - -
Amo11g1562 574 PANTHER PROTEIN PHOSPHATASE RELATED 164 352 - -
Amo11g1562 574 PANTHER PROTEIN PHOSPHATASE RELATED 128 161 - -
Amo11g1562 574 PANTHER PROTEIN PHOSPHATASE RELATED 439 573 - -
Amo11g1562 574 PANTHER PROTEIN PHOSPHATASE RELATED 356 431 - -
Amo11g1562 574 SUPERFAMILY CCCH zinc finger 180 205 IPR036855 GO:0046872
Amo11g1562 574 MobiDBLite consensus disorder prediction 1 65 - -
Amo11g1562 574 MobiDBLite consensus disorder prediction 392 427 - -
Amo11g1562 574 MobiDBLite consensus disorder prediction 136 153 - -
Amo11g1562 574 MobiDBLite consensus disorder prediction 86 107 - -
Amo11g1562 574 MobiDBLite consensus disorder prediction 472 500 - -
Amo11g1562 574 MobiDBLite consensus disorder prediction 1 36 - -
Amo11g1562 574 ProSiteProfiles Zinc finger C3H1-type profile. 509 537 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1562 Amo-Chr11 65481357 65486379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1562 476 538 C2H2 Transcription Factor Family AT5G18550 38.462 2.34e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo11g1562 zf-CCCH 6.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1562 - - adu:107489296 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1562 11 65481357 65486379 Amo13g0108 13 1575334 1578914 ECH
Amo11g1562 11 65481357 65486379 Amo11g1562 11 65481357 65486379 ECH