Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1552 ATGACAACCACTTCCCTTCTCTTTCTCTTTCTCTTCTCTCTCCTCTCCCCGGCCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGCTCAAGAAGTGACCAGGCAAATCAATGCGTCTGTTGCTAGGAGGAACTTGGGGTACTTGTCTTGCGGGACAGGTAACCCAATCGACGACTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACAGACAGAGGCTTGCAGACTGCGCTATCGGCTTCGGGAAGAACGCCATTGGCGGAAGGGACGGAAAAATCTACGTGGTGACTGATTCTGCTGACGACAACCCAGTGAACCCGAAGCCGGGGACGCTTCGCTATGCAGTGATTCAGGACGAGCCCTTATGGATCATATTCGCAAGGGACATGGTGATTCAGTTGAAGGAAGAACTTATAATGAACTCCTTCAAGACCATAGATGGGAGAGGTGCTAGCGTGCACATTGCTGGTGGACCATGCATAACAATTCAGTATGTGAATAACGTTATAATACATGGTATTCACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCACGGCACTACGGGTGGAGGACTCTATCGGACGGTGATGGGGTCTCCATATTTGGCGGGAGCCACGTGTGGGTTGATCATTGCTCCTTGTCTAACTGCAGGGACGGTTTGATTGATGCCATTCACGGCTCCACCGCAATTACAATTTCTAACAATTACATGACGCACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATATACACAAGACAAGAATATGCAGGTTACTATTGCTTTTAACCACTTCGGTGAAGGCCTTGTTCAGAGAATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCCAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCAAATGACAGGTTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAGGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAATGGTGCATTTTTCACTGCATCTGGGGCTGGAGCCTCTTCAAGTTATGCAAGGGCTTCAAGTTTGAGTGCAAGACCATCCACTCTTGTGGGCACTATAACAACTGGTGCAGGTGCACTCGTTTGTAAGAGGGGTTCTCGTTGCTGA 1218 0.4836 MTTTSLLFLFLFSLLSPALISSSPVQDPELVAQEVTRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSADDNPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVNNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWRGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSTLVGTITTGAGALVCKRGSRC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Amo11g1552 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Amo11g1552 405 Gene3D - 56 398 IPR012334 -
Amo11g1552 405 SMART amb_all 131 328 IPR002022 -
Amo11g1552 405 PANTHER PECTATE LYASE 18-RELATED 4 402 IPR045032 GO:0030570
Amo11g1552 405 SUPERFAMILY Pectin lyase-like 38 399 IPR011050 -
Amo11g1552 405 Pfam Pectate lyase 139 322 IPR002022 -
Amo11g1552 405 PANTHER PECTATE LYASE 4 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1552 Amo-Chr11 64728908 64731172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1552 5 405 Polysaccharide Lyase AT5G63180 81.886 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1552 K01728 - gmx:100101868 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1552 11 64728908 64731172 Amo13g0102 13 1509220 1512718 ECH
Amo11g1552 11 64728908 64731172 Amo11g1552 11 64728908 64731172 ECH
Amo01g2009 01 57527448 57529748 Amo11g1552 11 64728908 64731172 hybridization