Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1521 TACCCCTTTGCTTCATACACCTCTGCCGATTTTGCTCCCGGAGCCTCCCCCTCGTCCCCACGCGCTTCTCCTCCTCTTTTGGCTACCATCGGCGTTTTTCTTCCACATTTTCGCCACCGTGTCCAACATCGTCTTGCTTCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGCTATCTCAAACAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAGGTTGATTTTGGTAGAGAGCCGGATCCACCGCCTTGCACGTTACTACAAGAAGAACTTCCACCCGTACGGAAATAGTAAGTATCAAATATGTATTTTCTTTAAATCACAACGGTTTCTTAATGATTTGACGCTTACTCTATCAACACTTCTACCTGTAGTTTCTATAAATAATGACAGCAAAGATCAATCAGATTTCTCAATTGGACTTAAGATGTATAATGAGGTGCAACGTTGCTTTCTCACAGTTGGCTTGGTGTATCCAGATGATTTGTTTCTGTTTCTTGTAAATGTAAGTTGTTGA 537 0.4246 YPFASYTSADFAPGASPSSPRASPPLLATIGVFLPHFRHRVQHRLASEIPEDLYHLIKKAISNRKHLERNRKDKDSKFRLILVESRIHRLARYYKKNFHPYGNSKYQICIFFKSQRFLNDLTLTLSTLLPVVSINNDSKDQSDFSIGLKMYNEVQRCFLTVGLVYPDDLFLFLVNVSC* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1521 178 Coils Coil 57 77 - -
Amo11g1521 178 CDD Ribosomal_S15p_S13e 48 101 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo11g1521 178 PANTHER 40S RIBOSOMAL PROTEIN S13 42 98 - -
Amo11g1521 178 MobiDBLite consensus disorder prediction 1 21 - -
Amo11g1521 178 Gene3D - 48 108 - -
Amo11g1521 178 SMART Ribosomal_S15_2 38 116 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo11g1521 178 PANTHER RIBOSOMAL PROTEIN S15P/S13E 42 98 IPR023029 -
Amo11g1521 178 SUPERFAMILY S15/NS1 RNA-binding domain 44 97 IPR009068 -
Amo11g1521 178 Pfam Ribosomal protein S15 48 97 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1521 Amo-Chr11 62864816 62866181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1521 43 97 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.091 1.57e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1521 K02953 - aip:107630757 198.364