Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1518 ATGGCTGCTTCTGCTTCTTCTTCTTYGSCTTCATCTTCTAAGAAGGATTCAGTGTACCGCGGAATCCGGTGCCGAGGAGGGAAATGGGTATCCGAGATCCGAGAGCCGAGAAAGACGACCCGAATATGGCTCGGCACCTTTCTCAAGCCGGAGATGGCTGCGGCAGCCTATGACGTGGCAGCACTGGCACTCAAGGGTGCAGAAGCGCCCTTAAACTTCCCTGCCATGGTAGGGAAGTATCCAATGCCAAAGTCTAGTTCCGCAGCTGACATCCGCAGCGCTGCCACCGCTGCGGCGCAGCTGATTATGGCTGAACTTGCATCACCAACCAACAATAATGCAGTTCAGCCTAACATTGATAGTGAAAAGAATAATAATAATAATAATGATGATAATGATAACAATAACACTAATAATGATAGTGCTGCTCCTTTGTGTGAAGATGAACCGGTTGAGTTTTTGGACGAAGAAGCAATTTTCTCCTTGCCGAGTTTGCTGGTCGATATGGCAGAGGGAATGCTGCTTTCTCCACCCAGAATGAGTCCGTCGTCGCCTGACTCGCCGGAAAATTATTCCGGCGGAGGAGACAGTTTGTGGAACTACTAA 606 0.4901 MAASASSSXXSSSKKDSVYRGIRCRGGKWVSEIREPRKTTRIWLGTFLKPEMAAAAYDVAALALKGAEAPLNFPAMVGKYPMPKSSSAADIRSAATAAAQLIMAELASPTNNNAVQPNIDSEKNNNNNNDDNDNNNTNNDSAAPLCEDEPVEFLDEEAIFSLPSLLVDMAEGMLLSPPRMSPSSPDSPENYSGGGDSLWNY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1518 201 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Amo11g1518 201 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Amo11g1518 201 MobiDBLite consensus disorder prediction 171 201 - -
Amo11g1518 201 MobiDBLite consensus disorder prediction 185 201 - -
Amo11g1518 201 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Amo11g1518 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 201 - -
Amo11g1518 201 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Amo11g1518 201 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Amo11g1518 201 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Amo11g1518 201 MobiDBLite consensus disorder prediction 108 150 - -
Amo11g1518 201 PANTHER ETHYLENE RESPONSE FACTOR 6 201 - -
Amo11g1518 201 MobiDBLite consensus disorder prediction 108 143 - -
Amo11g1518 201 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Amo11g1518 201 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1518 Amo-Chr11 62843765 62844953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1518 13 201 AP2-EREBP Transcription Factor Family AT5G52020 51.295 1.34e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo11g1518 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1518 - - adu:107489031 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1518 11 62843765 62844953 Amo11g1518 11 62843765 62844953 ECH