Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1509 ATGGGCGTGGGAGAGACCACAAAACTCGAACCTGAACCCGAACCCGAACCGAAAGATGTTCACCGCCACCAAGAAGAGGAAGAAGAAGACGACGACGACGTGGAAGAAGAAGACGAAGGCTTGTCCGACACAAGAACAGCGATAGCATTGGGTCTGTCAGCGAAGGGGAAAGGGCAGAGGCAGAGGCAGCAGCAGCAGGAGTGCGCGGTGGTCCAGCAGGTGTCGGACAAGCTGGTGAGCGGCAGCCTTCAGTGGAAGATAGAYGCAGCCAGAGAGATCCGTAAGCTCGTCAGGAAATCGCCTTCGTCCTCTAAGACGAGGTCCAGGCTGGGCGCGGCTGGAGTGGTCCAGCCTCTCGTCTTCATGCTGTCGTCATCCAACCCCGATGCCCGTTACTCCTCCCTCCTCGCTCTCCTCAACCTCGCCGTCCGCAACGAACGAAACAAGGTCAAAATAGTGACAGCTGGTGCTATCCCTCCTCTGGTGGAACTCCTCAAAACGCAAAATAGTAGTATAAGGGAATTAGCGACAGCGGCAATCTTGTCACTCTCAGCTGCAGCTCCCAATAAGCCCATAATTGTTGCTTCTGGAGCTGCGCCTCTGCTTGTTKAGATCCTCAACTCTGGAAGTGTTCAAGGCAGAGTTGATGCCGTTACAGCCCTCTATAATCTCTCCACCATCATCYAGAAGAATTCTACTGAACTCCTTAATGCTAGTGCTGTTTCTCCTCTCATCAACCTCCTTAAAGAGTGCAAGAAATACTCCAAGTTTGCCGAGAAAGCTACMGCGCTACTCGAYATTCTCTCCAACTTTGAAGAGGGACGAACCGCAATCTCAGTTGCAGATGGCGGGATTTTAACCTTAGTAGAGACAGTTGAAGATGGATCACTAGTCAGCACACAACATGCTGTTGGAGCTCTGCTGTCATTGTGTCTAAGCTGCCGAGACAAATACCGGGAACTTATCCTCAAAGAAGGAGCAATCCCAGGTTTGTTACGWCTTACAGTGGAGGGCACATCAGAAGCYCAAGATAGAGCACGTGTGCTTCTGGATTTGCTTAGAGATTCTCCCCCGGAAAGAAGACTAGCCTCCTCGGTTTTGGAGAAAATTGTTTATGACATCGCTGAACGCGTAGATGGAGCAGACAAAGCTGCTGAAACAGCTAAAAGGTTATTACAAGACATGGTTCAGAGGAGTATGGAACAAAGCTTGAACTGCATTCAGCATAGAGCAGCATCTTGTAATCCTTCTGTGATTCCTTCCACTTGA 1269 0.5012 MGVGETTKLEPEPEPEPKDVHRHQEEEEEDDDDVEEEDEGLSDTRTAIALGLSAKGKGQRQRQQQQECAVVQQVSDKLVSGSLQWKIDAAREIRKLVRKSPSSSKTRSRLGAAGVVQPLVFMLSSSNPDARYSSLLALLNLAVRNERNKVKIVTAGAIPPLVELLKTQNSSIRELATAAILSLSAAAPNKPIIVASGAAPLLVXILNSGSVQGRVDAVTALYNLSTIIXKNSTELLNASAVSPLINLLKECKKYSKFAEKATALLDILSNFEEGRTAISVADGGILTLVETVEDGSLVSTQHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTSEAQDRARVLLDLLRDSPPERRLASSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEQSLNCIQHRAASCNPSVIPST* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1509 422 Pfam Armadillo/beta-catenin-like repeat 145 184 IPR000225 GO:0005515
Amo11g1509 422 Pfam Armadillo/beta-catenin-like repeat 188 225 IPR000225 GO:0005515
Amo11g1509 422 SUPERFAMILY ARM repeat 72 399 IPR016024 -
Amo11g1509 422 Gene3D - 258 411 IPR011989 -
Amo11g1509 422 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 58 387 - -
Amo11g1509 422 Gene3D - 69 257 IPR011989 -
Amo11g1509 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Amo11g1509 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Amo11g1509 422 MobiDBLite consensus disorder prediction 1 59 - -
Amo11g1509 422 SMART arm_5 228 270 IPR000225 GO:0005515
Amo11g1509 422 SMART arm_5 144 185 IPR000225 GO:0005515
Amo11g1509 422 SMART arm_5 271 312 IPR000225 GO:0005515
Amo11g1509 422 SMART arm_5 103 143 IPR000225 GO:0005515
Amo11g1509 422 SMART arm_5 186 226 IPR000225 GO:0005515
Amo11g1509 422 MobiDBLite consensus disorder prediction 9 25 - -
Amo11g1509 422 PANTHER U BOX DOMAIN-CONTAINING 58 387 - -
Amo11g1509 422 MobiDBLite consensus disorder prediction 26 40 - -
Amo11g1509 422 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 283 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1509 Amo-Chr11 61446744 61449908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1509 76 355 U-box Gene Family AT3G54790 40.569 6.73e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1509 K08332 - gmx:100782472 526.168