Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1458 ATGGAGTCAAGCGCCGGCGGCATCAGCGGCGGCGTTACGGTGGTCGGATCAGATGCTCCGTCGGAGTATCAAATAGCTCCGAGGACAGAGAACCCTTCTCCAGCAGGAGGATCGGCCGCGCCAATCCCTGCGCCAGCTCCGACGAACCAAGGCGGTGCTCTGCCGCATCCTCCGCCACATATGGCGAAGATGACATCGCCTCCGGCAACAGCGCCGGGGAAGAAGAAGAGAGGGCGGCCCAGAAAGTATGGCCCAGACGGGTCAGTGGTGGCGCTGTCCCCAAAGCCAATATCGTCTTCGGCACCGCTGGCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGACGAAGCGCGGGAAGGTGAAGGCAGCTGGTACCGTGAGCAGAGCCAAGTTTGAGGTTGAGAATTTAGGTGAATGGGTTGCATGCTCGGTTGGTGCTAATTTCACACCCCATTTCATCACTGTTAATCCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGCCCACGAGCTATATGCATTTTGTCAGCAAATGGAGTCATATCAAGTGTTACACTTCGTCAGCCCGATTCTTCTGGTGGCACATTGACGTATGAGGGACGTTTTGAAATTCTATCTCTAAGCGGCTCGTTCACACCAAGTGAAACTGCAGGAACACGAAGCAGATCGGGTGGCATGAGTGTCTCTTTAGCAGGTCCAGATGGACGAGTTATAGGTGGTGGAGTCGCTGGTCTATTGGTGGCTGCAAGTCCCGTGCAGGTAGTGGTTGGAAGTTTTCTAGCAGGGAACCAACATGAGCAAAAGCCAAGAAAACCAAAACCTGATATTATAGCATCAACTGTGATGCCGGCTGCGAGTGTTCCTGTGTCAACGGCCGATCCAGTTGCTGTTCTGCAATCGCAGGCTTCCTTCCGAGGAGATAGTTGGTCTGCTGTTCCTGCAGATGTGAATAAGAACAAGCCGGCTGACATTAATGTGTCGCTTCCTGGAGGGTAA 1008 0.5367 MESSAGGISGGVTVVGSDAPSEYQIAPRTENPSPAGGSAAPIPAPAPTNQGGALPHPPPHMAKMTSPPATAPGKKKRGRPRKYGPDGSVVALSPKPISSSAPLALPPVIDFSAETKRGKVKAAGTVSRAKFEVENLGEWVACSVGANFTPHFITVNPGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSETAGTRSRSGGMSVSLAGPDGRVIGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKPKPDIIASTVMPAASVPVSTADPVAVLQSQASFRGDSWSAVPADVNKNKPADINVSLPGG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1458 335 CDD DUF296 149 263 IPR005175 -
Amo11g1458 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Amo11g1458 335 Gene3D - 150 277 - -
Amo11g1458 335 MobiDBLite consensus disorder prediction 1 94 - -
Amo11g1458 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 265 - -
Amo11g1458 335 MobiDBLite consensus disorder prediction 48 65 - -
Amo11g1458 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 333 - -
Amo11g1458 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 333 IPR039605 GO:0003680
Amo11g1458 335 ProSiteProfiles PPC domain profile profile. 145 288 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1458 Amo-Chr11 55625536 55630593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1458 4 332 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.908 2.04e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1458 - - gmx:100801730 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1877 01 50776586 50782475 Amo11g1458 11 55625536 55630593 hybridization