Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1405 ATGGCAGCGGAGTCGGTGAGGATGGCAACTTCGTCTCTCTGCAATCTGAATGGGTCGCAGAGGAGACCGGCCATGTTAAGTCCGGTTCGGTACATGGGTGCTCGACCAAAACCCTATAACGCTTCAGCTACTTCATCTTCTCTCTCTCACTTCTTTGGGAGTTCCAGAATCAGAATAAGTTCTTCAAAGCTCTACCATTTGCACCACAAGACTCCAAGAAACTTGTCAGTTTTGGCTATGTCCGCTGATGAGACAAAGCGTGCTGTTCCGTTAAGGGATTATCGCAATATTGGTATCATGGCTCACATTGATGCTGGCAAGACAACCACGACTGAACGAATTCTCTACTACACTGGGAGAAACTACAAGATTGGAGAGGTGCACGAGGGAACAGCTACAATGGACTGGATGGAACAGGAACAAGAAAGAGGGATTACTATTACTTCTGCTGCAACCACCACATTCTGGAATAAGCATCGGATCAACATTATTGACACTCCTGGTCATGTTGACTTCACCTTAGAAGTGGAGCGTGCCCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAACCACAATCAGAAACGGTGTGGAGGCAGGCTGATAAATATGGGGTCCCACGAATTTGTTTTGTAAATAAGATGGATCGTCTTGGAGCCAATTTCTTCCGAACAAGAGACATGATTGTAACAAACTTAGGTGCCAAACCACTTGTAATTCAGTTGCCAATTGGCTCAGAAGATAGCTTTAAGGGAGTTGTTGATCTGGTAAGGATGAAAGCTATAGTTTGGTCCGGAGAAGAGTTGGGTGCCAAGTTTGACTATGTAGATATTCCAGAAGATCTTCAAGAGTTGGCTCAGGATTACCGATCCCAGATGATAGAAACCATAGTTGAGCTGGATGATCAGGCTATGGAGAATTACCTGGAAGGAGTTGAACCAGATGAAGAAACTATAAAAAAACTAATCAGGAAGGGAACCATTGCAGCAAGTTTTGTGCCGGTGATGTGTGGCTCAGCTTTCAAAAACAAAGGGGTCCAACCTTTACTTGATGCTGTGGTGGATTATCTACCTTCACCAATTGATTTGCCACCAATGAAGGGCAGTGATCCTGAAAACCCTGAAGTGACAATAGATAGGAAAGCAGATGACGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGATCCCTCACGTTCGTCAGGGTGTATTCTGGAAAGCTTTCTGCGGGCTCTTATGTACTCAATGCAAACAAGGGGAAAAAAGAGAGAATTGGCAGGCTTCTAGAAATGCATGCAAACAGCAGAGAGGATGTTAAAGTAGCTTTGACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACGTTGTCTGACCCGGAGAATCCGGTTGTGCTTGAGCGGATGGACTTCCCCGACCCTGTTATAAAGGTTGCAATTGAACCCAAAACTAAAGCCGATGTTGACAGGATGGCTGCTGGTTTAATCAAACTTGCACAGGAAGACCCTTCTTTCCACTTCTCTAGGGACGAAGAGATTAACCAGACAGTAATTGAAGGAATGGGAGAATTACATCTCGAAATCATTGTTGATCGACTCAAAAGAGAATTTAAGGTTGAAGCCAATGTTGGTGCTCCCCAAGTGAACTACAGGGAAAGCATTTCCAAACTCTCGGAAGTAAAGTATGTACACAAGAAACAGTCAGGTGGACAGGGTCAGTTTGCAGATATCACAGTTCGGTTTGAACCCATGGACCCAGGGAGTGGATATGAATTCAAGAGTGAAATAAAGGGAGGTGCTGTACCGAAAGAGTACATTCCAGGGGTCATCAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTTGCTGGCTTCCCTGTTGTTGATGTACGTGCAGTGCTTGTGGATGGTTCTTACCACGATGTAGATTCAAGTGTGCTGGCATTCCAGCTTGCAGCAAGAGGAGCCTTCCGGGAAGGAATGAGGAAAGCCGGGCCAAGGATGCTTGAACCTATAATGAAAGTAGAAGTTGTTACTCCTGAAGAACATTTGGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGCTTTGGTGACAAACCAGGTGGCCTTAAGGTTGTGGATGCCCTGGTTCCTCTTGCTGAGATGTTTCAATACGTGAGCACACTCAGAGGAATGACAAAGGGACGTGCTTCCTACACAATGCAATTAGCCATGTTCGACGTGGTGCCACAGCACATTCAGAACCAACTTGCCACAAAGGAGCAAGAAGTTGCCGCTTAG 2346 0.4506 MAAESVRMATSSLCNLNGSQRRPAMLSPVRYMGARPKPYNASATSSSLSHFFGSSRIRISSSKLYHLHHKTPRNLSVLAMSADETKRAVPLRDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQLPIGSEDSFKGVVDLVRMKAIVWSGEELGAKFDYVDIPEDLQELAQDYRSQMIETIVELDDQAMENYLEGVEPDEETIKKLIRKGTIAASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPIDLPPMKGSDPENPEVTIDRKADDDEPFSGLAFKIMSDPFVGSLTFVRVYSGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLSDPENPVVLERMDFPDPVIKVAIEPKTKADVDRMAAGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKLSEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPKEYIPGVIKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKEQEVAA* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1405 781 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 135 150 IPR031157 -
Amo11g1405 781 SMART EFG_IV_2 564 682 IPR005517 GO:0005525
Amo11g1405 781 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 PRINTS GTP-binding elongation factor signature 142 150 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 Hamap Elongation factor G, chloroplastic. 84 781 IPR030848 GO:0003746|GO:0006414|GO:0009507
Amo11g1405 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 365 IPR027417 -
Amo11g1405 781 Gene3D - 85 375 IPR027417 -
Amo11g1405 781 Gene3D Elongation Factor G (Translational Gtpase), domain 3 491 568 - -
Amo11g1405 781 SUPERFAMILY Translation proteins 348 488 IPR009000 -
Amo11g1405 781 SUPERFAMILY EF-G C-terminal domain-like 488 565 IPR035647 -
Amo11g1405 781 Gene3D Translation factors 376 490 - -
Amo11g1405 781 CDD EFG_mtEFG1_IV 567 682 IPR005517 GO:0005525
Amo11g1405 781 Gene3D - 569 772 IPR014721 -
Amo11g1405 781 TIGRFAM small_GTP: small GTP-binding protein domain 94 264 IPR005225 GO:0005525
Amo11g1405 781 CDD EFG_mtEFG_II 394 476 - -
Amo11g1405 781 Gene3D - 688 759 - -
Amo11g1405 781 SUPERFAMILY EF-G C-terminal domain-like 687 776 IPR035647 -
Amo11g1405 781 Pfam Elongation factor Tu GTP binding domain 93 365 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 78 774 - -
Amo11g1405 781 CDD EFG_mtEFG_C 687 765 IPR035649 -
Amo11g1405 781 Pfam Elongation factor Tu domain 2 408 474 IPR004161 GO:0005525
Amo11g1405 781 Hamap Elongation factor G [fusA]. 90 776 IPR004540 GO:0003746|GO:0005525|GO:0006414
Amo11g1405 781 SMART EFG_C_a 684 772 IPR000640 -
Amo11g1405 781 PANTHER RIBOSOME-RELEASING FACTOR 2, MITOCHONDRIAL 78 774 - -
Amo11g1405 781 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 367 IPR000795 GO:0003924|GO:0005525
Amo11g1405 781 Pfam Elongation factor G C-terminus 685 771 IPR000640 -
Amo11g1405 781 Pfam Elongation factor G, domain IV 563 681 IPR005517 GO:0005525
Amo11g1405 781 CDD EFG_III 489 564 IPR009022 -
Amo11g1405 781 SUPERFAMILY Ribosomal protein S5 domain 2-like 563 683 IPR020568 -
Amo11g1405 781 CDD EF-G 96 366 - -
Amo11g1405 781 Pfam Elongation Factor G, domain III 488 561 IPR041095 -
Amo11g1405 781 TIGRFAM EF-G: translation elongation factor G 87 776 IPR004540 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1405 Amo-Chr11 50809298 50813321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1405 77 752 Eukaryotic Initiation Factors Gene Family AT1G56070 25.091 6.09e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1405 K02355 - gmx:100797377 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1816 01 46872286 46876259 Amo11g1405 11 50809298 50813321 hybridization