Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1396 ATGTCATCATCCTCCTCCTCTTCTTCTTCTTCAACTACATTATCACTGGACCACATCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACTGTCCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACGGTCACGGTGCGATGCGGCCATTGCACCAATCTGCTGCCGGTGAACATGCGAGGCCTTCTTCTTCCATCGCCCAATCAATTCCATTTCGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATTCCGAATCCATCCCCAAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTAGGACTGTTGTTGATGAGCTTCCACGCCCACCTATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCCGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTCCTGATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA 663 0.4827 MSSSSSSSSSSTTLSLDHIPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHFGHSFFSPTHNLLEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVRQQEGEEVLMKDAGFYASANVGVSPY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1396 220 Pfam YABBY protein 21 183 IPR006780 GO:0007275
Amo11g1396 220 PANTHER PROTEIN YABBY 4 8 218 - -
Amo11g1396 220 SUPERFAMILY HMG-box 127 176 IPR036910 -
Amo11g1396 220 PANTHER PROTEIN YABBY 6-RELATED 8 218 IPR006780 GO:0007275
Amo11g1396 220 Gene3D High mobility group box domain 128 201 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1396 Amo-Chr11 50455770 50459861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1396 32 218 C2C2-YABBY Transcription Factor Family AT4G00180 60.766 8.56e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo11g1396 YABBY 4.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1396 K25796 - gmx:100798441 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1396 11 50455770 50459861 Amo11g1396 11 50455770 50459861 ECH
Amo01g1809 01 46455270 46459173 Amo11g1396 11 50455770 50459861 hybridization