Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1316 ATGGTGAGAGCTCCTTTCTATGACAAATATGGAGTGAAGAAAGGTGCATGGAGTAGAGAAGAGGATCAAAGATTAATAGCTTTTGTTCAAAGATATGGTCATTCTAATTGGCGTCAGCTCCCAAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGCTGGTTGAATTACTTGAGGCCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGAAGAATTAATAATCAAATTACACCAAGAATTAGGAAATAGATGGTCTTTGATTGCTGAAAGACTTCCTGGAAGAACAGACAATGAAATAAAGAACCATTGGCATAGCCACCTCAAGAAGTTATCATCAAAAMACAACAACAATGAGATCAAYCCATCRTCTGAATCTGAATCTGAATCAAAATCAAACAACCCAATTGATGATGATATTCTTGAAGGAAAACATACCAATCAGCCTAAAGASTCTGTAAGGCCAAGTTATGATTATGTTGATAGTGCTAATAATAATAAATTCCAGCACCGTGTTCTAGAAAGTTCATCATCAACAGAAACTTCGTCATATACTGATGATGAAGTAGGTCACAGCTATTATTCTCTTATTACTCCCAATAATGTTGAACAATCAACAATAATGAATAACTCTCCAACATCAAGCGAAGATTATTGTGTGGTTCCATCAGTATCATTTGAAGAATTTGGTGGAGATTTTTGGACTGAGCCATTCATAGTGGCAAATAATGATGCATATGGTAATGATGAGATAATAATAAGTGGTGAAGACGATGTTGGGTTTCTTGTTCCATACTTGTACGAGAGTGCAGATTTTTGTTTTAACTTGTAG 843 0.3582 MVRAPFYDKYGVKKGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTQEEEELIIKLHQELGNRWSLIAERLPGRTDNEIKNHWHSHLKKLSSKXNNNEINPSSESESESKSNNPIDDDILEGKHTNQPKXSVRPSYDYVDSANNNKFQHRVLESSSSTETSSYTDDEVGHSYYSLITPNNVEQSTIMNNSPTSSEDYCVVPSVSFEEFGGDFWTEPFIVANNDAYGNDEIIISGEDDVGFLVPYLYESADFCFNL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1316 280 CDD SANT 69 112 IPR001005 -
Amo11g1316 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo11g1316 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo11g1316 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo11g1316 280 CDD SANT 16 61 IPR001005 -
Amo11g1316 280 Gene3D - 13 66 - -
Amo11g1316 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Amo11g1316 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo11g1316 280 MobiDBLite consensus disorder prediction 107 165 - -
Amo11g1316 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo11g1316 280 SMART sant 13 63 IPR001005 -
Amo11g1316 280 SMART sant 66 114 IPR001005 -
Amo11g1316 280 MobiDBLite consensus disorder prediction 115 134 - -
Amo11g1316 280 MobiDBLite consensus disorder prediction 135 149 - -
Amo11g1316 280 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 250 - -
Amo11g1316 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo11g1316 280 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Amo11g1316 280 Gene3D - 68 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1316 Amo-Chr11 45533738 45535608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1316 1 141 MYB Transcription Factor Family AT2G31180 60.274 9.65e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g1316 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1316 K09422 - gmx:100781032 232.261