Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1315 ATGGTGAGAGCTCCATACTTCGATGCGAATGGAATAAAGAAAGGTGCCTGGAGTGAAGAAGAGGATAAGAAACTTACTGCTTATGTTGAGAGATATGGTCACCCTAATTGGCGTCAACTCCCAAGGCTTGCAGGTTTGTTGAGATGTGGAAAGAGCTGCAGACTTCGTTGGATGAATTACTTGCGGCCAAATCTAAAGAGAGGGAACTACAGCCAAAAGGAAGAGCAGCTTATCATGGATTTGCATAAACAACATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACAGACAACGAGATCAAGAACTATTGGCATAGCCACCTGAAGAAGTTCCAAAACTGCAATGTGAACAACACATCAAGTGATGATGATGATGATGATGATTTGAACAAGTCCAAGTCTTCTTCTCAGAATACCAAAGAACATGAAAGACCAAAAAGTGAAGTCCTTACTTTTACTACTGATGATGATAACGATGATGATTCACACCATATCTTGGAAAGTTCGTTGTCCAATGTGACAACCGAGTCTTCCTATTCATACACTGAAGAAGAAGAAGACAACAAGGGCAACAACAACAACAACAACGCATGGCTCTGCTTTTCCTCTGGTCATGAAGAAGAATCAAATAGGGAAGAAGATAGGTTTGCTTCGTGGGGTGCAACAACTTTGTTTGATGAGTTTGGTTCCAGTTTTTGGACTGAACCATTTATTTCAGATGATGCTTTTAGTCAAGATTACAATTACATTTTGTATGATAGAGAAGATCCTTTTTTCATTTGA 795 0.3962 MVRAPYFDANGIKKGAWSEEEDKKLTAYVERYGHPNWRQLPRLAGLLRCGKSCRLRWMNYLRPNLKRGNYSQKEEQLIMDLHKQHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFQNCNVNNTSSDDDDDDDLNKSKSSSQNTKEHERPKSEVLTFTTDDDNDDDSHHILESSLSNVTTESSYSYTEEEEDNKGNNNNNNAWLCFSSGHEEESNREEDRFASWGATTLFDEFGSSFWTEPFISDDAFSQDYNYILYDREDPFFI* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1315 264 CDD SANT 69 112 IPR001005 -
Amo11g1315 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo11g1315 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo11g1315 264 Gene3D - 69 114 - -
Amo11g1315 264 PANTHER MYB TRANSCRIPTION FACTOR 1 257 - -
Amo11g1315 264 CDD SANT 16 61 IPR001005 -
Amo11g1315 264 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo11g1315 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo11g1315 264 MobiDBLite consensus disorder prediction 130 170 - -
Amo11g1315 264 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo11g1315 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo11g1315 264 Gene3D - 7 67 - -
Amo11g1315 264 SMART sant 66 114 IPR001005 -
Amo11g1315 264 SMART sant 13 63 IPR001005 -
Amo11g1315 264 MobiDBLite consensus disorder prediction 123 199 - -
Amo11g1315 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Amo11g1315 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1315 Amo-Chr11 45513263 45515229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1315 1 165 MYB Transcription Factor Family AT2G31180 51.176 1.10e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g1315 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1315 K09422 - gmx:100781032 291.967