Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1308 ATGTCCATAAACGAGGATGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGACGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCATGCCAGTTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGGAATATGAGGTATCTCCATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTTTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCATGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCATTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAAGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTTGAAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCGACGAATGGTGTTTTCAATAAAAATCTCTACTCGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAAATATGAATGCGTTAATGATGTCGTTGATGATAAATGTGACACACGACATGTGCAGATCGATTTTATTGTGGTTGCATTTGGAGTAAGGAGTTCCTACCATTGTGGTTATGCAATACAGTTGAAAAAACAGAGCTTTACGGATATCTTCCGTGGGAAAAATGAATCGGTACAGCAGCACAAGTGCCTAAAAGTTTGTGGAAAAGGTACCGCGGTCTGTGTCAAGCCGACTTCAGAAGACGTTCCTTGTTCGGCTAAGTGGGAAGGAGTATCAACTCCAATTTTGTCGGAGCTACCAACGGGTGACGGAATAAAAGTCAGACGGAGGAAGGTAGATGATAGTGTTTGGTTAAATGAAGGTTGGTATGCACTTCCTGAGTTCTTAAGACTAAAGCATGGATATTTTGTGGTTTTCAAGTACATGCTGAATCCGTATACAAATTAA 1776 0.4336 MSINEDDVKNDSDNDLGDDFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLHLDDRSREARSLTRTKCPARLRRAGALNITVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMHVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKKSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEAKDSGFSPERFANSSRSFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASTNGVFNKNLYSLTQVKESQQDKRHSFTKYECVNDVVDDKCDTRHVQIDFIVVAFGVRSSYHCGYAIQLKKQSFTDIFRGKNESVQQHKCLKVCGKGTAVCVKPTSEDVPCSAKWEGVSTPILSELPTGDGIKVRRRKVDDSVWLNEGWYALPEFLRLKHGYFVVFKYMLNPYTN* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1308 591 PANTHER OS03G0181600 PROTEIN 160 279 - -
Amo11g1308 591 PANTHER OS03G0181600 PROTEIN 57 139 - -
Amo11g1308 591 SMART 26again6 182 209 IPR006564 GO:0008270
Amo11g1308 591 Pfam FAR1 DNA-binding domain 74 140 IPR004330 -
Amo11g1308 591 ProSiteProfiles Zinc finger CCHC-type profile. 323 338 IPR001878 GO:0003676|GO:0008270
Amo11g1308 591 MobiDBLite consensus disorder prediction 362 391 - -
Amo11g1308 591 MobiDBLite consensus disorder prediction 1 42 - -
Amo11g1308 591 ProSiteProfiles Zinc finger SWIM-type profile. 171 207 IPR007527 GO:0008270
Amo11g1308 591 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 139 IPR031052 GO:0006355
Amo11g1308 591 SUPERFAMILY Retrovirus zinc finger-like domains 309 341 IPR036875 GO:0003676|GO:0008270
Amo11g1308 591 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 160 279 IPR031052 GO:0006355
Amo11g1308 591 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1308 Amo-Chr11 45437075 45442016 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g1308 FAR1 1.8e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1308 - - aip:107640898 641.343