Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1273 ATGGGATACTCTCCTCAACATCCTTTCTTGGTTGACATTGCTGGAGTTATGACCGGTGTAGAGGGTGAGAGAAAATATATGAATGATGATAAACTTATTGACATATTGGTCATTCATATTGAGAATAACAGTTTAAAGCTTAATATTGCTGTTCTTGGAGAGATGGTGGACCGGATCAATGGTCTTGTGGCAGCGGGTACCAATATTTTACAGAACATTATGTATGGTACCAGACTCTTGATAAATTCAGATGTTCCTGAGGCTGTGATGCTTCGAAAAAGATATCGTAGTGTCTGTCTGTGCTTTTCTGGCAAACCGGCGTATGTTAATGAAGATGAAGTTTTATATTCCACTAAGAGGAAGACAATAAAGGAGTTACGTGCGGCTGCGGATGTTGGATTCTATGTTGTTCTGGCTACTGTTCTTGATGTTGAACCCATTCTAAGTTGGTGGTATAAATCTTGTATTTGCAGCGTGAAGGTAGAAGCTAATGCGAATACATACTTCTGCGATGGCTGTAATAGGGATGTGAATAATGTGGTTGATAGGTATAGGTTGAATTTGTTGGTTTTTGATGGTACTGCTACAACAACTTTTGTTGTGTTCCATAAGGAGGCCACAACTCTATTCGGATGGACCTGTACTGAGATGGTAAAAGAGTTGAATATATGTGGTTTCTGCTGTTGA 687 0.3945 MGYSPQHPFLVDIAGVMTGVEGERKYMNDDKLIDILVIHIENNSLKLNIAVLGEMVDRINGLVAAGTNILQNIMYGTRLLINSDVPEAVMLRKRYRSVCLCFSGKPAYVNEDEVLYSTKRKTIKELRAAADVGFYVVLATVLDVEPILSWWYKSCICSVKVEANANTYFCDGCNRDVNNVVDRYRLNLLVFDGTATTTFVVFHKEATTLFGWTCTEMVKELNICGFCC* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1273 228 Pfam Replication factor-A C terminal domain 136 219 IPR013955 -
Amo11g1273 228 Gene3D - 110 223 IPR012340 -
Amo11g1273 228 SUPERFAMILY Nucleic acid-binding proteins 118 220 IPR012340 -
Amo11g1273 228 CDD RPA1_DBD_C 121 222 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1273 Amo-Chr11 43948326 43951931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1273 77 217 Core DNA Replication Machinery Family AT5G08020 24.675 1.92e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1273 - K07466 ahf:112729129 340.887