Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1247 ATGCGTATAGAAGAATTGAAGTGTGGTGGTGAGGTGGAAGGAAATGGAGAGGAAGAGAGGTCATCAACGGGGGCTCGCGCGCTTTTCTATCCCACGCTGCTTTACAATGTTGTAAGGAACAAGATTCAGGCCGAATTTCGATGGTGGGATAAGGTTGACGAGTTCATATTATTAGGTGCTGTTCCATTTCCAATTGATGTTCCCCGTCTGAAGGAGCTTGGTGTTCGTGGGGTTGTCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGACCATCTAGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCGTTGCATGATATATGCCGTGCTGTGGACTTCATACATGAAAATGCATTATCTGGACACACTACATATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTGTTGTTATTTGTTATCTGGTGCACCACAAACTAATGACCCCGGAGGGTGCATATGATTATGTGAAGTCAATTCGGCCAAGGGTGCTTTTGGCTTCATCTCAGTGGCAAGGACTAAAGTGTCCGCTTTTAAAATCCTTGGGGACTGATTTGGATTATTTTAGAGCAATGGCTGTTCAGGATTACTACCGCTACCTCATCGGGAGAAGATTTGTTGCACATGCACCTTTCGCAGATCTATTTGTAAAGACTAAGGCTTCCGAGGCTGCAATAGCTTCAAGAAATCATATGATGTTTGACGATAATTCTGTAGTTGTGATAACTGAGTCCGATCTTGAAGGATATGATCCAAGCATTCAATTGCAAACTATGCCTGGTGAAATTTGGGCAGATTTAAGTGTGGTTTACCGTGTAGGGGTTGCTGGACGGGCAGCACTGGCAAGAATCTCATGCCTTTGGCTGCAGTGTGGTCCTAACCAGAAGATTTCTGCGGAGAAACTTACCAGTGATGACAGTTGCTCAATCCGGAGTAATAGTAATAATTTGGGAGGAATTAGTATCAATATCCATGTGTATTGA 1020 0.4373 MRIEELKCGGEVEGNGEEERSSTGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVVTLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHDICRAVDFIHENALSGHTTYVHCKAGRGRSTTVVICYLVHHKLMTPEGAYDYVKSIRPRVLLASSQWQGLKCPLLKSLGTDLDYFRAMAVQDYYRYLIGRRFVAHAPFADLFVKTKASEAAIASRNHMMFDDNSVVVITESDLEGYDPSIQLQTMPGEIWADLSVVYRVGVAGRAALARISCLWLQCGPNQKISAEKLTSDDSCSIRSNSNNLGGISINIHVY* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1247 339 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 116 184 IPR000387 GO:0016311|GO:0016791
Amo11g1247 339 ProSitePatterns Tyrosine specific protein phosphatases active site. 137 147 IPR016130 GO:0016311|GO:0016791
Amo11g1247 339 Pfam Dual specificity phosphatase, catalytic domain 88 186 IPR000340 GO:0008138|GO:0016311
Amo11g1247 339 CDD PTPMT1 48 187 IPR044596 GO:0004721
Amo11g1247 339 ProSiteProfiles Dual specificity protein phosphatase domain profile. 48 199 IPR020422 GO:0006470|GO:0008138
Amo11g1247 339 SMART dsp_5 51 192 IPR020422 GO:0006470|GO:0008138
Amo11g1247 339 Gene3D Protein tyrosine phosphatase superfamily 48 188 IPR029021 -
Amo11g1247 339 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 23 339 - -
Amo11g1247 339 PANTHER - 23 339 - -
Amo11g1247 339 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 40 187 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1247 Amo-Chr11 42648090 42651309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1247 24 339 Protein tyrosine phosphatase (PTP) family AT2G35680 55.521 6.83e-117 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1247 - - adu:107485250 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1718 01 40093559 40097110 Amo11g1247 11 42648090 42651309 hybridization