Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1245 ATGGCGAACCAAGCTGAAATCTCYGCCCTTAACCGCATCAAGCTGCATCTCTTGGGTGAACTCTCACCGCTCGGYACACCAGAGTTCACTAAAAGCAAACTCTGGCTTCAAATAGACGAACCCTCCACAGACCCTAATTTCTCTTTTCATCAATCAGAATGCCAATCTCAATCTCAYTCTGAATTTTCCCCTACCGACTCCTCAATTTCTCTCAACCACTACTTCACCGATCTTCCCCTCTTTGAATTCGATTCAAAGCCTCAAGTGATCGACCTTGAATCCGACCTCGAAGCACCCAAAACCCTGCCTCAAAGCAATCCCCAAATCGAGATGAACAAGGCTCATCGCCTCAACCGGAAACCGTCGCTGCAAATCTCGCTCCCGAAGAAGAAAACCGAATGGATTCAGTTCGGAAACCCGGATCCGAAACCCGAGGCTGTGGAACCGTTCGTTCAGCAGCAGCAGCAGCAAAAACAACAACCGGAGCCAGAGAAGAAGCACTACAGAGGCGTTCGCCAAAGGCCGTGGGGAAAATTCGCCGCGGAGATTCGTGACCCGAACAAACGAGGGTCCAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGCGCTGCCTTCAAGCTCCGAGGATCCAAGGCGATCTTGAACTTCCCTCTCGAGGTTGAATCCATGGCCACCTCTGCTTCTGCTTCCACCTCCGGCGATGGCGGTGATAGGAAGCGCCGCCGCGAAGAAGAGGAAGTGGCGCCGATGACGAAGGAGGTGGAGGAAGAAGTTGTTGAGGTGGTTATGCCGGTGGTGAAGAAGGAGAAGACGACGACTTTTGAATCGGAGGTTAACTGTATAAGGGAGCTTCCGTTAACGCCGTCAATTTGGACGGGGTTCTGGGACAGTGATGTGAAGGGAACAGGAATGGGAATATTTAGCGTGCCGCCGTTGTCACCGTTATCTTCTCCCCTTGCTGTTATGGTTGTGTGA 999 0.5245 MANQAEISALNRIKLHLLGELSPLGTPEFTKSKLWLQIDEPSTDPNFSFHQSECQSQSHSEFSPTDSSISLNHYFTDLPLFEFDSKPQVIDLESDLEAPKTLPQSNPQIEMNKAHRLNRKPSLQISLPKKKTEWIQFGNPDPKPEAVEPFVQQQQQQKQQPEPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVESMATSASASTSGDGGDRKRRREEEEVAPMTKEVEEEVVEVVMPVVKKEKTTTFESEVNCIRELPLTPSIWTGFWDSDVKGTGMGIFSVPPLSPLSSPLAVMVV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1245 332 MobiDBLite consensus disorder prediction 99 122 - -
Amo11g1245 332 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Amo11g1245 332 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 317 - -
Amo11g1245 332 MobiDBLite consensus disorder prediction 242 260 - -
Amo11g1245 332 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 Pfam AP2 domain 167 217 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 MobiDBLite consensus disorder prediction 136 171 - -
Amo11g1245 332 CDD AP2 167 225 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Amo11g1245 332 MobiDBLite consensus disorder prediction 232 260 - -
Amo11g1245 332 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 317 - -
Amo11g1245 332 SUPERFAMILY DNA-binding domain 167 227 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1245 Amo-Chr11 42140818 42142132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1245 1 324 AP2-EREBP Transcription Factor Family AT5G47230 43.452 1.04e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo11g1245 AP2 4.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1245 K09286 - gmx:100816039 307.76