Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1239 ATGAACAAGGCTCATCGCCTCAACCGGAAACCGTCGCTGCAAATCTCGCTCCCGAAGAAGAAAACCGAATGGATTCAGTTCGGAAACCCGGATCCGAAACCCGAGGCGGTGGAACCGTTCGTTCAGCAGCAACAACAACAACAACAACCGGAGCCAGAGAAGAAGCACTACAGAGGCGTTCGCCAAAGGCCGTGGGGAAAATTCGCCGCGGAGATTCGTGACCCGAACAAACGAGGGTCCAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGCGCTGCCTTCAAGCTCCGAGGATCCAAGGCGATCTTGAACTTCCCTCTCGAGGTTGAATCCATGGCCACCTCTGCTTCTGCTTCCACCTCCGGCGATGGCGGTGATAGGAAGCGCCGCCGCGAAGAAGAGGAAGTGGCGCCGATGACGAAGGAGGTGGAGGAAGAAGTTGTTGAGGTGGTTATGCCGGTGGTGAAGAAGGAGAAGACGACGACTTTTGAATCGGAGGTTAACTGTATAAGGGAGCTTCCGTTAACGCCGTCAATTTGGACGGGGTTCTGGGACAGTGATGTGAAGGGAACAGGAATGGGAATATTTAGCGTGCCGCCGTTGTCACCGTTATCTTCTCCCCTTGCTGTTATGGTTGTGTGA 666 0.5526 MNKAHRLNRKPSLQISLPKKKTEWIQFGNPDPKPEAVEPFVQQQQQQQQPEPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVESMATSASASTSGDGGDRKRRREEEEVAPMTKEVEEEVVEVVMPVVKKEKTTTFESEVNCIRELPLTPSIWTGFWDSDVKGTGMGIFSVPPLSPLSSPLAVMVV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1239 221 MobiDBLite consensus disorder prediction 1 72 - -
Amo11g1239 221 MobiDBLite consensus disorder prediction 131 149 - -
Amo11g1239 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 206 - -
Amo11g1239 221 Gene3D AP2/ERF domain 55 116 IPR036955 GO:0003700|GO:0006355
Amo11g1239 221 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Amo11g1239 221 MobiDBLite consensus disorder prediction 121 149 - -
Amo11g1239 221 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Amo11g1239 221 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Amo11g1239 221 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Amo11g1239 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 7 206 - -
Amo11g1239 221 SUPERFAMILY DNA-binding domain 56 116 IPR016177 GO:0003677
Amo11g1239 221 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
Amo11g1239 221 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1239 Amo-Chr11 41863479 41864827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1239 9 213 AP2-EREBP Transcription Factor Family AT5G47230 52.683 2.54e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo11g1239 AP2 2.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1239 K09286 - gmx:100816039 234.187