Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1189 ATGGAGCTTAGTTTTATGCACAAACTTGGGGTTGTTTGTCTCATATTATTGGTCTTAAATAGTGCAGTGTGCTGTTTTGCGGATTCATATAGGAAATCAAGAGCATCTTATTACAATACCCCTGATGGCTACGGGAATCCATGGGGAGCTTGTGGCTATGGCGAGTACGGAAGGACTGTCAACGGTGGCAATGTTGCGGCCGTGTCCGGTGATATTTGGAAAGGTGGAAGTGGTTGCGGCGCATGCTATCAGATTCGGTGTAAAATAGCACAATATTGTGACGAAGATGGAACACGTGTAGTAGTAACAGATTACGGTGAAGGAGACAGAACAGAGTTCATAATGAGCGAACATGCATTCTCAAATTTGGCACGTGACTCAGCTGCTTCTGCAAAGTTGATGAAATATGGTGTTGTGGACATTGAATACAAGAGGGTCTCTTGTAAATACTCTAACCGCAATGTTCTTGTTAAGATCCATGAAAAGAGCAATAATCCTTATTACTTTGCTATCTTGCTTCTCAATGTTGGTGGAAAATGTGATGTTGCTGCTGTTCAGTTGTGGCAGATTACAAAGAATGGAGTCCACTGCGAAGGGTGTATGGAACAGTTTTTGATTATGAGAACCCACCAAGTGGTAAAATCACCTTAA 651 0.4224 MELSFMHKLGVVCLILLVLNSAVCCFADSYRKSRASYYNTPDGYGNPWGACGYGEYGRTVNGGNVAAVSGDIWKGGSGCGACYQIRCKIAQYCDEDGTRVVVTDYGEGDRTEFIMSEHAFSNLARDSAASAKLMKYGVVDIEYKRVSCKYSNRNVLVKIHEKSNNPYYFAILLLNVGGKCDVAAVQLWQITKNGVHCEGCMEQFLIMRTHQVVKSP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1189 216 PANTHER EXPANSIN-B3 5 191 - -
Amo11g1189 216 Gene3D - 147 208 IPR036749 -
Amo11g1189 216 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Amo11g1189 216 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Amo11g1189 216 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Amo11g1189 216 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Amo11g1189 216 Pfam Lytic transglycolase 66 142 IPR009009 -
Amo11g1189 216 Gene3D - 26 146 IPR036908 -
Amo11g1189 216 SUPERFAMILY PHL pollen allergen 153 192 IPR036749 -
Amo11g1189 216 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 153 IPR007112 -
Amo11g1189 216 SUPERFAMILY Barwin-like endoglucanases 16 151 IPR036908 -
Amo11g1189 216 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 191 - -
Amo11g1189 216 SMART dpbb_1 65 143 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1189 Amo-Chr11 39744733 39748203 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1189 1 189 Expansin Gene Family AT4G17030 48.677 9.12e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1189 - - vra:106777337 251.906