Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1186 ATGGAATTTAGTTTAAAGCACCAAGTTGGGCTTATGTATGTCATATTACTCTTACCTTCGCTATGTAGCTCACAGGATTCTTTCACTGATTCCAGAGCAACCTATTATGGCAGCCCTGATTGTTATGGCAATCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACGGTCAATGATGGCAGTGTTGCAGCGGTGTCTAGGCTATGGAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGCAAGGTGCAAATTAGAGCAATACTGCGACGAGGAGGGAACCTACGTGGTGGTAACAGACTACGGCGAAGGAGACAGAACAGACTTCATTTTGAGCCCACGCGCCTACAAGAAGTTGGGACGAAACGATGAAGCTGCAGCAGAGCTATTCAAATATGGTGTGGTTGACATTGAATACCGAAGGGTCCCTTGCAGATATGAAGGCTACAACATTGTCTTTAAGGTCCATGAACGAAGCAAGAATCCTGAATACTTTGCTGTTGTCATTCTCTATGTTAATGGTGCTTATGATGTAACTGCTGTTCAGTTGTGGCAGGAAGATTGCCAAGAATGGACAGAAATGAGGAGGGTTTATGGGGCAGTGTTTGATTATGCCAACCCACCAAGTGGTGAAATCAATTTGAGGTTCCAAGTGAGTGGCAGTGCAGGTATCTATTGGGTGCAATCCCAGAATGCTATTCCTAGTGATTGGACTGCTGGAGCTGCTTATGATTCACAGGATCAAGATAACAAATCGATAGGCACTACTAGTATTCAATTGTTTACTCTTAAGGATGTTGATGTTAATGTTACTAGTAAGGAAGCTGGTAAAACATTGGAGTTCATAAAGGGTAAATTTGTTCAACAGAAATGCTATTTTGCAATCTTTGAAATAGTGACCAAGTCTTACAAACTACAAATAGATTGTAATTTCTGA 939 0.4271 MEFSLKHQVGLMYVILLLPSLCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAAVSRLWRNGTGCGACYQARCKLEQYCDEEGTYVVVTDYGEGDRTDFILSPRAYKKLGRNDEAAAELFKYGVVDIEYRRVPCRYEGYNIVFKVHERSKNPEYFAVVILYVNGAYDVTAVQLWQEDCQEWTEMRRVYGAVFDYANPPSGEINLRFQVSGSAGIYWVQSQNAIPSDWTAGAAYDSQDQDNKSIGTTSIQLFTLKDVDVNVTSKEAGKTLEFIKGKFVQQKCYFAIFEIVTKSYKLQIDCNF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1186 312 Gene3D - 146 247 IPR036749 -
Amo11g1186 312 Gene3D - 19 145 IPR036908 -
Amo11g1186 312 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Amo11g1186 312 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Amo11g1186 312 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Amo11g1186 312 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Amo11g1186 312 Pfam Lytic transglycolase 64 140 IPR009009 -
Amo11g1186 312 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 248 - -
Amo11g1186 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Amo11g1186 312 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Amo11g1186 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Amo11g1186 312 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Amo11g1186 312 PANTHER EXPANSIN-B3 4 248 - -
Amo11g1186 312 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1186 Amo-Chr11 39677688 39680589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1186 6 247 Expansin Gene Family AT4G17030 61.633 4.53e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1186 - - gmx:100779487 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1649 01 37544735 37547146 Amo11g1186 11 39677688 39680589 hybridization
Amo05g0424 05 4887642 4889119 Amo11g1186 11 39677688 39680589 PCT
Amo11g1186 11 39677688 39680589 Amo05g0424 05 4887642 4889119 PCT