Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1162 TATGCCGAGTTAGAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTCCTGTCTGAGGGGGGATTTGGATCCGTTCACAGAGGGGTTCTACCGGATGGACAAGTCGTTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGAGACAGCGAGAACCATTAGAATGGGCTGCACGGCAAAAAATTGCCATTGGAGCTGCTCGTGGGTTACGATATCTTCATGAAGAGTGTAGAGTGGGATGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCGAGGTGGCAACCTGATGGAGACACGGGTGTGGAAACCCGAGTAATTGGAACATTCGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAGAAAGCTGATGTTTATTCATTTGGGGTGGTATTGGTGGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCACGCGGCCTAAGGGACAGCAGTGTCTTACTGAAAATCCTATATTAATCCCCTTTTATGCACGACCTCTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGAACCAATACTTAGAAAATGAGGTATATTGCATGTTGCATGCTGCATCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTCGTATACTGGACGGCGACATGGTCATGGACACAAGTTACATTTCAACTCCAAGTTATGATGTGGGAAACCGGAGTGGCCGACTCTGGTCGGAGCCGCTGCAGAGGCAGCACCATTACAGGGGTCCTCTGTTAGAGGAGTCACTTGAATCATTCAGTGGGAAGCTATCTCTTGACAAA 1032 0.4651 YAELELATGGFSEANFLSEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWAARQKIAIGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTENPILIPFYARPLLEEYAIEELIDPRLGNQYLENEVYCMLHAASLCIRRDPHSRPRMSQVLRILDGDMVMDTSYISTPSYDVGNRSGRLWSEPLQRQHHYRGPLLEESLESFSGKLSLDK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1162 344 PANTHER INACTIVE PROTEIN KINASE SELMODRAFT_444075 1 342 - -
Amo11g1162 344 Gene3D Transferase(Phosphotransferase) domain 1 87 300 - -
Amo11g1162 344 Pfam Protein tyrosine and serine/threonine kinase 16 287 IPR001245 GO:0004672|GO:0006468
Amo11g1162 344 CDD STKc_IRAK 17 290 - -
Amo11g1162 344 ProSiteProfiles Protein kinase domain profile. 11 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1162 344 SUPERFAMILY Protein kinase-like (PK-like) 2 301 IPR011009 -
Amo11g1162 344 PIRSF ILK 258 297 - -
Amo11g1162 344 PIRSF ILK 2 231 - -
Amo11g1162 344 ProSitePatterns Tyrosine protein kinases specific active-site signature. 132 144 IPR008266 GO:0004672|GO:0006468
Amo11g1162 344 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 342 - -
Amo11g1162 344 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1162 Amo-Chr11 37588974 37590980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1162 1 307 Trihelix Transcription Factor Family AT1G70460 51.735 1.35e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo11g1162 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1162 - - ahf:112783851 666.766