Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1098 ATGGTTTGCACTGTCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAGGAGACGCCGCTTCCGCGGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGACGAGAATGAAGCCTTATCAGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAATATAAACAGCGGCCAAGGAGGTTTCAAATTTCTTGAGAATGCCAAGGATTTGCCAACCATTATGACTTCAAACGATCATTGCCTGAGCACCATGATGAAATGCATAGCGCTCGGTGCAGTTGAGTTCCTTCACAAACCTCTCTCCGAGGACAAGCTTCGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAATGCTAGTGCAAGTGTTATGTCCGAATCGCTAAAACCGGTCAAAGAATCTGTAGTATCCATGTTGCAGCTCCAAACAGACAATGAACAACAAGAAAGTACATATACTGATGATGATCCTGATCCTGGAAGCGATAAGTATCCGGCTCCATCGACCCCCCAATTGAATCAGGGATTGAGATTGATGGACGATGGCGATTGTCCAGAGCAGACTAATTGCTCAATAGAAAAGGAGAGTGGGGAACATGATGGAGAAGGAGAATCGAAATCCGTCGAAACTACATGTGAAAATTTGAATTCTGAAAGTAATAATCCTAATGAACCAATGAACACTGAAAAGACTTTGGTCAAGAATTTAGCGGAAGGTTCTAGAGATGGGAACCATGATAGTTCTGTTTATAAGCATACAAATGATAAGGTTCTTAGCAGCGATGATGGTAATACAAAATCTTCAAATAAAGTGGATTCATGCACGTTGAAAGCTCATCGGAAGAAGATGAAAATAGACTGGACACCCGAGCTGCACAAAAAATTTGTGAAAGCGGTGGAACAACTAGGCCTTGACCAAGCTATTCCATCTCGAATAATGGATCTAATGAAAGTGGAGGGACTGACAAGGCATAATGTTGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTAAATCAAAGGGATCAAATGCAAAGGAGCTATTGTCTTCAACAACGACCAATAATGGCGTTTCCACCACCGAATCATTCCAATCACACCCTTTCGCCAGCTCCTGTGTATCCAGTGTGGAGGCAATCCGGCGGCCAAGCAGCAGCTATGCCGGTTTGGGGCCCTCCTGGTTATCCTCTCTGGCATCCTACAGAAAGTTGGCACTGGAAGCCGCTTCCCGGGTTGCAGATGCATGCGGATGCATGGGGATGCCCGGTTCTGCCACCTCCTCAGGCTCCTCTTCCTTGCTTTTCCTACCCTTTGAATGTTCGCGGCATGCACCATACTAGTGCTGTGGATTACAAGTCTATCATGCCACAGAGTTCCCTTGATCTTCATCTGGCCGAGGAGGTTGTTGACAAGGTAGTGAAAGAAGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAGCCTCCTTCCACAGATAGTGTGCTGGCCGAGCTTTCGCGAAAAGGCATATCGACCATCCCTCCATGTAGCAAGGGGTCCTAA 1641 0.4558 MVCTVNDLQQWKDFPKGLKVLLLEGDAASAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVNINSGQGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEDKLRNIWQHVVHKAFNASASVMSESLKPVKESVVSMLQLQTDNEQQESTYTDDDPDPGSDKYPAPSTPQLNQGLRLMDDGDCPEQTNCSIEKESGEHDGEGESKSVETTCENLNSESNNPNEPMNTEKTLVKNLAEGSRDGNHDSSVYKHTNDKVLSSDDGNTKSSNKVDSCTLKAHRKKMKIDWTPELHKKFVKAVEQLGLDQAIPSRIMDLMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQRSYCLQQRPIMAFPPPNHSNHTLSPAPVYPVWRQSGGQAAAMPVWGPPGYPLWHPTESWHWKPLPGLQMHADAWGCPVLPPPQAPLPCFSYPLNVRGMHHTSAVDYKSIMPQSSLDLHLAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTIPPCSKGS* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1098 546 MobiDBLite consensus disorder prediction 254 278 - -
Amo11g1098 546 MobiDBLite consensus disorder prediction 211 226 - -
Amo11g1098 546 Pfam Myb-like DNA-binding domain 306 353 IPR001005 -
Amo11g1098 546 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Amo11g1098 546 SUPERFAMILY Homeodomain-like 299 358 IPR009057 -
Amo11g1098 546 SMART REC_2 18 128 IPR001789 GO:0000160
Amo11g1098 546 Gene3D - 297 359 - -
Amo11g1098 546 MobiDBLite consensus disorder prediction 161 289 - -
Amo11g1098 546 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Amo11g1098 546 MobiDBLite consensus disorder prediction 227 253 - -
Amo11g1098 546 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Amo11g1098 546 SUPERFAMILY CheY-like 16 135 IPR011006 -
Amo11g1098 546 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 356 IPR006447 GO:0003677
Amo11g1098 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 357 IPR017930 -
Amo11g1098 546 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 544 - -
Amo11g1098 546 Gene3D - 18 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1098 Amo-Chr11 32980656 32992464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1098 1 543 Response Regulator Gene Family AT4G18020 49.217 8.11e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo11g1098 Response_reg 2.3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1098 - - ccaj:109791214 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1529 01 31908112 31914310 Amo11g1098 11 32980656 32992464 hybridization
Amo05g0457 05 5336605 5342828 Amo11g1098 11 32980656 32992464 PCT
Amo11g1098 11 32980656 32992464 Amo05g0457 05 5336605 5342828 PCT