Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1085 ATGAATTGGAAAAAATCTGAAAAGAAGGGTTGGAGTGAAATTAACAAAGGCCGCCTCCTACTCCAATTCAAAAACCACCTAACCGACCTTGACAACTCACTCTCTTCATGGAACCCTTCAGACACAACCCCGTGCCATTGGTGGGGTGTCACATGCCGCAACGCCACTACAACTCCCGTAACCGTCACCATCACCTCTCTCAACCTCCCCTCTACCACTCTCAACGGCCACCTGCAATCCCTCTCCGTTTGCTGCCGTCTCCGTCACCTCGACCTCTCCCAAAACACTCTTGTTGGAACCATTCCCTTCTCCCTCTCCCTCCTCACCGCCCTCCGCCACCTCGACCTCTTCTTCAACAACCTCTCCAGCAACATCCCCACTCAACTCAGCCACACTCTTCACCGCCTCGTGTTACTTGACTTAGTCAACAACTTCCTCAGCGGACCATTCCCGAACTCGTTAACTAACATGACGTCACTCAAGCTTTCTGGTAGAATCCCTGATAGCATGGCCAAATTGATCCAGTTGGGTACTCTTGATTTGAGCTATAATGAAATGTCTGGTGAAATTCTGGGTTGGATTAGCGGTTTGAATAGACTCAATGAGCTTAATTTGCACATAATAGGAAACCCTGAGCTTTGTGTTAAAGGATTTGGGAAATGTCATAGCTCAAGGGGTAGAAAGTACCGGAGGAACTTAAGAAAGAAGAAGAGAAGTTTAAATGTTTCAAAGTGGAGGTCGTTTCATAAGCTAGGCTTTGATGAGTTTGAGATTGTGAAATTGATGAGTGAAGACAATGTGATAGGGAGTAGATCATCTGGGAAGGTTTACAAGGTTGTTCTAAGCAGTGGTGCTGTTGTGGCCGTCAAGAAATTATGGAGAGAAACCAAGGATGGAATTGGGATTGTTGGTTCTGAAAAAGATGAATTTGATGTTGAAGTTGAAACACTAGGAAAAATAAGGCACAAAAATATAGTAAGGTTGTGGAGTTGCTACAACAGTGGTGACAGCAGGCTCCTGCTTTATGAATATATACCGAATGGGAACTTGGCCGATATGTTGAAGAGTAACAAGAAAAGCTTGTTGGATTGGCCAACAAGGTCCAAGATTGCAATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGGTATTGTGCCATTCATTGTTCATAGGGATGTAAAATCGAACAACATATTGCTCGACAGTGAGTTTGGAGCAAAAGTGGCTGATTTTGGAGTTGCCAAAATTGTTAATAGAACTAGCCAAGGGGCGGTGTCCATGTCTGTAATTGCAGGCTCTTATGGTTACATTGCACCAGAATATGCATATACTCTTCGGGTGAACGAAATGAGTGATATTTACAGCTTTGGTGTTGTCATTTTGGAGTTAGTAACCGAAAAACCTTCTAATCATGCAGATTACGGGGAAAATGATCTGGTAAAATGGGTCTCATCCTTGTTGGAACAGAAAGGAATGGATCTTGTGATTGATCCTGCCCTTGATTCAACATACAGGGAGAAAATCAGCAAGGTACTTAGTGTGAGGTTTCTCTGCACAAACGTTCTCCCTATAAACCGCCCTGCAATGTGGTGGGTGGTGAAAATGCTTCGGGAAGCAGCAACGGTTCCCAGATCCCGAAGCATGAGGGAGGTAGCACACTCCCCTTATTTTGATAGAGATTTCTTATCGTGA 1695 0.4442 MNWKKSEKKGWSEINKGRLLLQFKNHLTDLDNSLSSWNPSDTTPCHWWGVTCRNATTTPVTVTITSLNLPSTTLNGHLQSLSVCCRLRHLDLSQNTLVGTIPFSLSLLTALRHLDLFFNNLSSNIPTQLSHTLHRLVLLDLVNNFLSGPFPNSLTNMTSLKLSGRIPDSMAKLIQLGTLDLSYNEMSGEILGWISGLNRLNELNLHIIGNPELCVKGFGKCHSSRGRKYRRNLRKKKRSLNVSKWRSFHKLGFDEFEIVKLMSEDNVIGSRSSGKVYKVVLSSGAVVAVKKLWRETKDGIGIVGSEKDEFDVEVETLGKIRHKNIVRLWSCYNSGDSRLLLYEYIPNGNLADMLKSNKKSLLDWPTRSKIAIDAAEGLSYLHHGIVPFIVHRDVKSNNILLDSEFGAKVADFGVAKIVNRTSQGAVSMSVIAGSYGYIAPEYAYTLRVNEMSDIYSFGVVILELVTEKPSNHADYGENDLVKWVSSLLEQKGMDLVIDPALDSTYREKISKVLSVRFLCTNVLPINRPAMWWVVKMLREAATVPRSRSMREVAHSPYFDRDFLS* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1085 564 Pfam Leucine rich repeat N-terminal domain 18 52 IPR013210 -
Amo11g1085 564 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 161 - -
Amo11g1085 564 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 229 543 - -
Amo11g1085 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Amo11g1085 564 Gene3D Ribonuclease Inhibitor 15 161 IPR032675 -
Amo11g1085 564 Pfam Protein kinase domain 264 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1085 564 SMART serkin_6 262 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1085 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 15 161 - -
Amo11g1085 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 162 206 - -
Amo11g1085 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 229 543 - -
Amo11g1085 564 Gene3D Transferase(Phosphotransferase) domain 1 345 555 - -
Amo11g1085 564 SUPERFAMILY L domain-like 18 206 - -
Amo11g1085 564 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 162 206 - -
Amo11g1085 564 Gene3D Ribonuclease Inhibitor 162 225 IPR032675 -
Amo11g1085 564 SUPERFAMILY Protein kinase-like (PK-like) 262 537 IPR011009 -
Amo11g1085 564 ProSiteProfiles Protein kinase domain profile. 262 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1085 564 Gene3D Phosphorylase Kinase; domain 1 245 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1085 Amo-Chr11 32425262 32428044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1085 40 561 Receptor kinase-like Gene Family AT1G28440 44.688 1.23e-140 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo11g1085 Pkinase 5.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1085 - - aip:107632602 669.848