Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1067 ATGGGTTGCACTGTGAGGGAAAAGCACATCAGAGCGAATCGGAGGCCCCGATCATCATCGAAACCCGATTCTGATTCGTGCGACAGAGACCCGATTTCCAAATCTATAGCTGAGTCTGGCCTCAAGCCCTTCAGGTACCATCACCATGTGCCTCCCAACAACAACAACAACGAACCTTCTTCTACCCAGAACACGAACCCTAACTCCGATGAAACGGGTTGGGGTTACTGCACGGAGGAACAGTTGGAGGAGATCCTCTTGAAGAACCTCGAATTCATTTACAACGAAGCGGTTTCCAAGCTCGTCGCTTTGGGTTACGATGAGGACGTTGCGGTCAAAGCTATTTTGAAAAACGGCCATTGCTACGGCGGAATGGATGTTCTCACCAACATACTACATAATTCGTTAGCCTACTTGAATAATAATAATAACAATAATAATAATAATAGTGCTGGAAATGGTGGGAATTTGGACGAGAGTGAGGCTGCTTTCTCTGATTTGAGGCACTTGGAGGAGTATTCTCTTGCTGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGTGATGCAATGTGGTGTTTGCTAATGAGTGATCTTCATGTTGGTAGGGCCAGCACTATGGAGATTCCGGTCCCGGGAAGTGGGTACCCGAGTACTGCCACTGTGGCTGCCACGGTTGAAGGTGGTGGTAATTCGGTGGTAGTTGGTGATGGTGGTGGCAATTCGGCGGTTGGTGGTGGTGGTGTTATGGCTCCTGCATTGTGTAGGTTTCATGGTGGTTGGGGATTTGGGAATGGGGCAGGCTCAGGGTTTCAGGCGAATGGGTTGTTCTCTTATGGTGCTGCTGAGATGAATTTGCATCTGCAAAGGGATATTGAGTTCCCTAAGAGGTTTAATCTTTCGCCTTCCATGAAATCATTGTTGAAGAGGAATGTGGCTGCGTTTGCTGCTGGTTTTAGGGCGAATTCGAAGCAATTGCAGACTCAGGCTCAGGTGAAGGCCTTTTCTGGTAGTGCTTCTGTGTCGAAGTTGGATTCTCCGGCTGTGAATGGGGCTGAAGCACTGGTTGAGCAGCCTGGACAGGTGGGAGAATCTCAGAATGTTGATAGCCAAGATGCTGTGAATTCAGTGCTGAGTAAGTTTCGTGATCTTAATCTTGATGAGAATTTGGAGCTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTCACTTTGTTTCATCAGATCAAGGATCTTGAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCTGCGAGAAAGCTAAGCAGTGATCTTACTGAGCTCAAGATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCACTCGAGGACACCACCATGAAGAGGCTCTCAGAGATGGAAAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCGAATGCAGCCGTGAGGAGACTAGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAGTTAAGTGCATCAGAGTCCGTGACAGCTTGCTTAGAGGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAGCTTCTTGCTTGGGAGAAACAGAAAGCTAAGCTGCAGCAGGAGATTGCTGATGAAAAAGCAAAGATATCGGAGACACAAGAAGTCTTGGCTCAGATTAGACAGCGCCAAAAAGACGCGGAGGTTAAGTGGAAAGAAGAGGTGAAGGCTAAAGAGGAAGCTTCAGCACTAATCGAAGAGGAGCGCCACTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAAACTCGAGGCTCTACGTCTGAAGATTGAGATAGATTTCCAGCGCCACAAGGACGATCTACTGCGACTTGAGCAAGAGCTCTCACGGCTTAAAGCGTCTGCACAGTCTGCCGAGCTGCATCATCAGTCAAATGCTGCTTCACCTGTTGGTGGCAACTCTGAGGGCGCAATGCCCCAGAGAGATACAATTGCCAAGCTACTTCAAGAACTAAATAATCTAGAGGATTATTCGGAGAAGGAAGTCAATGGCAACAGAGAATGCATTATATGCATGAAAGATGAAGTTTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCCGGTTGCGGTGATGAGTATGGAAGAAAGGGAAAAGCTGCTTGTCCTTGCTGCAGGGTTCCGATCCAACAACGAATTCGGGTGTTTGGTGCAAGCTCATAG 2250 0.4738 MGCTVREKHIRANRRPRSSSKPDSDSCDRDPISKSIAESGLKPFRYHHHVPPNNNNNEPSSTQNTNPNSDETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILKNGHCYGGMDVLTNILHNSLAYLNNNNNNNNNNSAGNGGNLDESEAAFSDLRHLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGSGYPSTATVAATVEGGGNSVVVGDGGGNSAVGGGGVMAPALCRFHGGWGFGNGAGSGFQANGLFSYGAAEMNLHLQRDIEFPKRFNLSPSMKSLLKRNVAAFAAGFRANSKQLQTQAQVKAFSGSASVSKLDSPAVNGAEALVEQPGQVGESQNVDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEIADEKAKISETQEVLAQIRQRQKDAEVKWKEEVKAKEEASALIEEERHSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNAASPVGGNSEGAMPQRDTIAKLLQELNNLEDYSEKEVNGNRECIICMKDEVSIVFLPCAHQVMCAGCGDEYGRKGKAACPCCRVPIQQRIRVFGASS* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1067 749 Coils Coil 529 577 - -
Amo11g1067 749 MobiDBLite consensus disorder prediction 16 32 - -
Amo11g1067 749 PANTHER OS05G0141500 PROTEIN 1 748 IPR046934 -
Amo11g1067 749 MobiDBLite consensus disorder prediction 642 665 - -
Amo11g1067 749 MobiDBLite consensus disorder prediction 1 74 - -
Amo11g1067 749 ProSiteProfiles Zinc finger RING-type profile. 695 735 IPR001841 -
Amo11g1067 749 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 748 - -
Amo11g1067 749 SUPERFAMILY RING/U-box 694 741 - -
Amo11g1067 749 Coils Coil 621 648 - -
Amo11g1067 749 Coils Coil 585 612 - -
Amo11g1067 749 Pfam Family of unknown function (DUF6592) 89 209 IPR046527 -
Amo11g1067 749 MobiDBLite consensus disorder prediction 50 74 - -
Amo11g1067 749 Pfam Zinc finger, C3HC4 type (RING finger) 692 740 - -
Amo11g1067 749 Coils Coil 473 514 - -
Amo11g1067 749 MobiDBLite consensus disorder prediction 642 658 - -
Amo11g1067 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 746 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1067 Amo-Chr11 31654140 31660607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1067 675 745 C3H Transcription Factor Family AT1G73950 33.333 3.32e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1067 - - adu:107483267 1342.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1494 01 30604133 30610606 Amo11g1067 11 31654140 31660607 hybridization
Amo05g0477 05 5528012 5531079 Amo11g1067 11 31654140 31660607 PCT
Amo11g1067 11 31654140 31660607 Amo05g0477 05 5528012 5531079 PCT