Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1034 ATGTGCAAAAAAAGTCACTACACACGCATCAAATATGCGCACGAACCACCATCACTACTCTTCCGCTTGTTGCTAGTGTGCGCACTTGTTGCCTTGCGTGCGCCGGTAGCGCAATACCCTACCCTACGCACCCCCACCACGCACCTCACTAACGACACCACCACCATCCTCCACCACCACCATCACCCTTACATAAATCGCAGCAGAGCTCAGATCTCGCGTTCTTCCAATCGCTCACGCATGTCGAAGGCGCGTGTCTACACCGACGTCAACGTTCTCCGCCCCAAAGAGTACTGGGACTATGAGTCCCTCAACGTTCAGTGGGGTGATCAAGATGATTATGAGGTTGTAAGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAACAGCAATGAGCGGTGTATAATCAAGATCCTCAAGCCTGTCAAGAAGAAGAAGATTAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGACTACTGTCATTCACAAGGCATAATGCATAGAGACGTGAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGATTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCATCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAGCCTTTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAAATAGCCAAGGTACTTGGGACTGATGAATTGAATGCATACCTGAATAAGTATCACCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAACCCTGGTCAAAATTCATCAATGCAGATAACCAGCATCTTGTGTCTCCAGAGGCTATTGATTTCCTTGATAAGCTCCTTCGGTATGATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGAGCTGCAGAAAGTAGCAGAATGCGGACACAGTAA 1242 0.438 MCKKSHYTRIKYAHEPPSLLFRLLLVCALVALRAPVAQYPTLRTPTTHLTNDTTTILHHHHHPYINRSRAQISRSSNRSRMSKARVYTDVNVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1034 413 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1034 413 CDD STKc_CK2_alpha 95 399 IPR045216 GO:0004674|GO:0006468
Amo11g1034 413 Pfam Protein kinase domain 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g1034 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 18 413 - -
Amo11g1034 413 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Amo11g1034 413 SUPERFAMILY Protein kinase-like (PK-like) 83 403 IPR011009 -
Amo11g1034 413 Gene3D Transferase(Phosphotransferase) domain 1 191 399 - -
Amo11g1034 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Amo11g1034 413 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Amo11g1034 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA 18 413 IPR045216 GO:0004674|GO:0006468
Amo11g1034 413 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1034 Amo-Chr11 30374418 30379148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1034 112 399 Core Cell Cycle Gene Families AT1G76540 29.450 1.70e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Amo11g1034 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1034 K03097 - gmx:100819679 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1034 11 30374418 30379148 Amo11g1034 11 30374418 30379148 ECH
Amo01g1263 01 20166927 20171406 Amo11g1034 11 30374418 30379148 hybridization
Amo05g0620 05 7362882 7367662 Amo11g1034 11 30374418 30379148 PCT
Amo11g1034 11 30374418 30379148 Amo05g0620 05 7362882 7367662 PCT