LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g1023	ATGAAGTTAACAAAAGAGGAGGCAAAAAGGATGTCAGAAATGGAGGATGTTGTGTCAGTTTTTCCAAACAAGAAAAATGGGCTTCACACAACAAGATCATGGGATTTTATAGGGTTTCCCCAGCAAGTGAAAAGAACAAATRAAGAAAGTGAGATTATTGTTGGAGTATTAGACTCTGGAATATGGCCAGAGTCTGAGAGTTTTAGTGACAAAGGATTTGGTCTACCACCCAACAAATGGAAGGGATCATGTCATAACTTCACTTGTAATAGGAAAATCATTGGAGCAAAATCCTACAACATCGAAGGTAGCTATGCCAAAGATGACATTAGATCTGCTAGAGATTCAAACGGCCATGGATCACACGTTTCATCAACAATTGCTGGGAACTTAGTTGACTCTGCAAGCCTCTTAGGGTACGCTTCAGGATCAGGGAGAGCACGTGGAGGAGCACCCTCAGCACGCATCGCCATCTACAAGGTCTGTTGGTCATCGGACGGCTGTGATGACGCCAACGTTCTTGCGGCATTTGATGACGCTATCCATGACGGCGTTGACGTCATCTCTATTTCAGTCGGGGCAGATGTGGCTTTTCCCTTTTCGTATTTTGAAGATGCAATTAACATTGGGAGTTTCCATGCAATGAAGAAAGGGATATTGACTTCTAACTCTGCCAATAATCTGGGTCCTGATCTTTCTTCTATGACTAATTATTCACCTTGGTTGCTCTCTGTGGCTGCCGCCACTATTGATAGAAAGTTTCTTACAAAGGTTCGGTTGGGCAATGGTATCACTTTTGAGGGGGTTTCAATAAATACATTTGATCTCAAAAACAAAATGTTCCCTTTAATTTACGGTGGAGATGCACCAAACACTGCTGGTGGGTATAACAGTTCCATATCCAGGTATTGTTATAAGGACTCATTGAATAAACATTTGGTGAGAGGCAAGATCGTTTTGTGTGAGAGCATTCTTGTTCCAACAGATATAGAGTTACTATCCGGTGCAGTTGGTATGATACATGGAGCCATATCCCCAAAAGATTTACCAAATAATTATGCAGTGCCTTCAACTTTCTTGAGTCTAAGGAACTTTAGATYAGTACATTCTTACTTAGCTTCAATGGGTAATAATGCAACAGCTACAATATTCAAGAGTGACGAAGTTAGAGACTCATTAGCCCCATATGTGGCTTCATTCTCATCAAGAGGTCCAAATCCAATCACACCAAACATTCTTAAGCCCGATGTGGTTGCCCCAGGAGTTAACATTTTAGCCGCATGGTCTCCAATTTCTCCAATTTCAGATGTTAAAGGTGACAAAAGATTAGTCCATTATAATATTATTTCTGGCACTTCAATGGCATGCCCTCATGCCACTGCAGCAGCTGCATATGTCAAATCATTTCATTCTAATTGGTCTCCTGCTATGATAAAATCTGCACTCATGACCACAGCTACTCCATTGAGTGCCACTCTTAATCCTGAGGCCGAATTTGCATATGGTGCGGGACTAATTAATCCTATTAAGGCAGCAAATCCTGGTTTAGTGTACGACATTAACGAAGTTGATTATGTCAAATTCTTGTGCCAGGAGGGAATTGAAACTAAAAACCTTGGGATTCTCACTAAAGATAATAGCAGTTGCAAGAAASTGGGAAAGACAGAGAGTGTATACGACCTCAACCTCCCATCAATTTCTCTCTACACAAACGTGTCATCTTTCACTCGAATTTTTCATAGAACAGTTATGAATGTTGGGTCCGCAACATCTACATATAAAGTGAAAGTGATGTACCCATCTTTTTTGGATATCCAAGTGAAACCGGATACGTTGTCGTTTGAATGTATAGGCCAAAAGAAATCATTCTCGGTCATTATAGAAGGGAGTTTGAATGTAAACACAGCTTCTGCTTCGTTGATTTGGGATGATGGAACATTTCAAGTTAGAAGCCCTATTGTAATGTTTAACCAATTGCCTGTCCCACCATTTATCTTTATCTAA	2004	0.4047	MKLTKEEAKRMSEMEDVVSVFPNKKNGLHTTRSWDFIGFPQQVKRTNXESEIIVGVLDSGIWPESESFSDKGFGLPPNKWKGSCHNFTCNRKIIGAKSYNIEGSYAKDDIRSARDSNGHGSHVSSTIAGNLVDSASLLGYASGSGRARGGAPSARIAIYKVCWSSDGCDDANVLAAFDDAIHDGVDVISISVGADVAFPFSYFEDAINIGSFHAMKKGILTSNSANNLGPDLSSMTNYSPWLLSVAAATIDRKFLTKVRLGNGITFEGVSINTFDLKNKMFPLIYGGDAPNTAGGYNSSISRYCYKDSLNKHLVRGKIVLCESILVPTDIELLSGAVGMIHGAISPKDLPNNYAVPSTFLSLRNFRXVHSYLASMGNNATATIFKSDEVRDSLAPYVASFSSRGPNPITPNILKPDVVAPGVNILAAWSPISPISDVKGDKRLVHYNIISGTSMACPHATAAAAYVKSFHSNWSPAMIKSALMTTATPLSATLNPEAEFAYGAGLINPIKAANPGLVYDINEVDYVKFLCQEGIETKNLGILTKDNSSCKKXGKTESVYDLNLPSISLYTNVSSFTRIFHRTVMNVGSATSTYKVKVMYPSFLDIQVKPDTLSFECIGQKKSFSVIIEGSLNVNTASASLIWDDGTFQVRSPIVMFNQLPVPPFIFI*	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo11g1023	667	ProSitePatterns	Serine proteases, subtilase family, serine active site.	451	461	IPR023828	-
	Amo11g1023	667	CDD	Peptidases_S8_3	28	487	IPR034197	-
	Amo11g1023	667	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	119	129	IPR022398	-
	Amo11g1023	667	Gene3D	Peptidase S8/S53 domain	52	525	IPR036852	GO:0004252\|GO:0006508
	Amo11g1023	667	ProSiteProfiles	Serine proteases, subtilase domain profile.	33	512	-	-
	Amo11g1023	667	SUPERFAMILY	Subtilisin-like	28	516	IPR036852	GO:0004252\|GO:0006508
	Amo11g1023	667	Gene3D	-	529	657	-	-
	Amo11g1023	667	PANTHER	PUTATIVE-RELATED	2	656	-	-
	Amo11g1023	667	Pfam	Subtilase family	50	504	IPR000209	GO:0006508\|GO:0008236
	Amo11g1023	667	PRINTS	Subtilisin serine protease family (S8) signature	115	128	IPR015500	-
	Amo11g1023	667	PRINTS	Subtilisin serine protease family (S8) signature	450	466	IPR015500	-
	Amo11g1023	667	PRINTS	Subtilisin serine protease family (S8) signature	49	68	IPR015500	-
	Amo11g1023	667	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	2	656	IPR045051	-
	Amo11g1023	667	Pfam	Fibronectin type-III domain	560	654	IPR041469	-
	Amo11g1023	667	CDD	PA_subtilisin_like	258	383	-	-
	Amo11g1023	667	Gene3D	-	251	390	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g1023	Amo-Chr11	29868855	29873635	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g1023	3	660	Subtilisin-like Serine Gene Family	AT5G59190	48.065	0.0	576

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g1023	-		-	gmx:100787973	937.947