Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1021 ATGGTGGAAGGGAAGACTGTAAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTATAGAGCCATCACAAGTGCATACTACAGAGGAGCAGTTGGTGCCCTCTTGGTGTATGACATTACCAAGAGGCAAACATTCGACAATGTCCAGCGATGGCTTCGCGAGCTAAGGGACCATGCCGACTCCAACATTGTTATCATGATGGCCGGAAACAAATCCGACCTTAATCATCTGAGAGCAGTGTCTACTGAAGATGCTGAAAGTTTGGCTGAAAAAGAAGGACTATCTTTTCTTGAGACTTCAGCATTGGAAGCCTATAATGTTGAGAAGGCATTCCAAACCATATTGTTTGATATATATCACATTATAAGTAAAAAGGCGCTCGCGGCGCAGGAAGCCACTTCTGCCGGTGTTCCTCAGGGAACCACCATAAATGTCGCGAACACGGCCAATAATGCAGAGAGTTCAAGGTGGAACTACACGTCTCTTACCATAAAAAGCACCAAACCACCCTATCATGACTCCTTTCTAGCAAAGAGTTCTTCACAACTAGAACATTACCCTGCAAGCTTTCACAATCTTCTTCTTCCACCCTATTTGGTGGATCAAAATCATCATGTGCCCCAAGAACCATGCAGTGATGTTAGAAACATTGGTCCTGTGGTTGTTCCTTTTACAGGGTATGCTTCCATATTGAAGAGATCAAGGTTTCTGAAGCCAGCTCAGCAGATTCTTGAAGACATGTGTGGCAGTGTTTTGGATCCTCCACCAAGATTGAATGAAAGTGGTGATGATCATGAAGAAGATCCCATCATTGGAACTAATGGTAGGGATGGAGTTCAGCATCATTGTAGGGATTCTGTACTTGGTTGCATGTTAGATGAGAAAGTAGCTGGGCTTGGAAATGCCACTCCTTACATATCCTTTGGAATCAAATCCATTTCCAAGCATTTTGGATGTTTGAAACATGCTATCTATGATCAACTTCAGTTCACAATGAAGAACACTACTCCTGCATCTAACAATGTTGTTGAAAAGGGTCTTCAATCAGTGCAAAGCTTACACTCAGTTCAACCTGTTTTGAGATCCCAAAGAGGGCTTCCGGATCATGCTGTAGCTTTGTTGAGAAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACTGATTCTGAAAAGGATACATTGGTTCAACAGACTGGCCTATCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTAAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGAATGGGTTACAGAAGACTCAAGAATCAGAAGTGATCCATCATGCAAGGAAGCCCACTATTGGCCCTTAA 1353 0.4331 MVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAESLAEKEGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEATSAGVPQGTTINVANTANNAESSRWNYTSLTIKSTKPPYHDSFLAKSSSQLEHYPASFHNLLLPPYLVDQNHHVPQEPCSDVRNIGPVVVPFTGYASILKRSRFLKPAQQILEDMCGSVLDPPPRLNESGDDHEEDPIIGTNGRDGVQHHCRDSVLGCMLDEKVAGLGNATPYISFGIKSISKHFGCLKHAIYDQLQFTMKNTTPASNNVVEKGLQSVQSLHSVQPVLRSQRGLPDHAVALLRRWLFEHFLHPYPTDSEKDTLVQQTGLSRCQVSNWFINARVRIWKPMVEEMHMNGLQKTQESEVIHHARKPTIGP* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1021 450 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 2 153 - -
Amo11g1021 450 SMART rho_sub_3 1 118 IPR001806 GO:0003924|GO:0005525
Amo11g1021 450 PRINTS Transforming protein P21 ras signature 97 119 - -
Amo11g1021 450 PRINTS Transforming protein P21 ras signature 62 75 - -
Amo11g1021 450 Gene3D - 1 155 IPR027417 -
Amo11g1021 450 Gene3D - 364 441 - -
Amo11g1021 450 ProSiteProfiles 'Homeobox' domain profile. 358 421 IPR001356 GO:0003677
Amo11g1021 450 Pfam Associated with HOX 295 325 IPR006563 -
Amo11g1021 450 SUPERFAMILY Homeodomain-like 365 429 IPR009057 -
Amo11g1021 450 Pfam Ras family 2 119 IPR001806 GO:0003924|GO:0005525
Amo11g1021 450 SMART HOX_1 361 425 IPR001356 GO:0003677
Amo11g1021 450 PANTHER - 2 153 - -
Amo11g1021 450 SMART ras_sub_4 2 122 - -
Amo11g1021 450 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
Amo11g1021 450 CDD homeodomain 362 422 IPR001356 GO:0003677
Amo11g1021 450 ProSiteProfiles small GTPase Ras family profile. 1 195 IPR001806 GO:0003924|GO:0005525
Amo11g1021 450 SMART prehox3 226 327 IPR006563 -
Amo11g1021 450 TIGRFAM small_GTP: small GTP-binding protein domain 2 115 IPR005225 GO:0005525
Amo11g1021 450 SMART rab_sub_5 1 122 - -
Amo11g1021 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 124 IPR027417 -
Amo11g1021 450 ProSiteProfiles small GTPase Rab1 family profile. 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1021 Amo-Chr11 29852533 29857904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1021 287 428 Homeobox Transcription Factor Family AT5G02030 51.515 8.14e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo11g1021 Ras 2.2e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1021 K07904 - adu:107457744 570.081