Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1019 ATTCCTCTCCCTCATCACCACCCTTCAACTACTACTACTATTAACCAACCTTCCTTCTTTCTTTCATTCCATGGAACTTGTTTCCTACCTCTCATTCTCCAACCTCTTTCTTCTTTCTCTCCCTCCTGTCCTTTTCCTTCCTCTTTCTTCACTTTTTCTTCTCTCAAAGTCTCTATCTCATATATGGCTCCTCCTTCAGATATCAATCACTTTTCTCATCCATGTATATATGGGGATTATAGTTCTTCACGCTCAGAGAGAAGGCCTAGTTTCATGAAATGGTTAAGTAAGCTTTTCAAAGGAGGGTCCAATAGAGGAAGAGGTGGCCGTCGCCTGCAAGAACCGGACGAGGAAAACATCGCTTGGCGCGCACCCCCTAGACCATTTGATGATGGTTCTAGAGCTCATAACAGGGAGAATGATGATCTCGGCCATGCGATGTCACGATCTTCAGCAGAAGATTTAAAGCGACCAAATGCACATGAAGGATATAACTGGGGGACAGACAATGATGATTATGGAAAAGCACTTCAAGATAGTTTGAACTCATCTGCATACCCTCCATATAATGCTGCTCCATATTACCCCAGAGATTATAGAAAAATATGTGGAGGGTGTAACCAAGAGATACTCTATGGAAATTGTTTGGGATGCTTGGATACTTATTTTCATCCAGATTGCTTTCGTTGTCACGCTTGTCAGTATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGATTGATTGAGTATAGGTGCCACCCTTTTTGGTCCCAAAAATACTGTCCATCTCATGAATATGATTATACATCTCGCTGCTGCAGTTGCGAAAGATTGGAGCCTCGGAATGTAAAATACTATAGACTTGAAGATGGAAGAAGTTTGTGCATGGAGTGCATGGAATCTGCGATAATAGACACTGGTGATTGCCAGCCTCTTTATCATTCTATCAGAGATTACTATGAAGGGATGAATATGAAAATAGGTCAACAAATTCCCATGCTTCTTGTGGCCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAAAATGCTGTTCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAGCAGACTATCACCAGTATACATAGAAAGCCAAGACATGGAGGCCATCGACGAATGACGAGAACTCAAAATCAAATGCTGGTTAGAAGATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCAAGGCTACTCACAGGTGCCATCCTTGCACATGAGTTGATGCATGCATGGTTAAGACTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGTATATGTCAGGTTCTCTCATACATGTGGCTTGAGTCAGAAGTAATGCCATCAACATCTGCAGCAGCAGCATCATCATCTTATCCTTCTTCATCCTCCTCTTCCTCAAAGAAAGGAGCAAAGTCTCATGTTGAAAACAAGTTGGGAGAGTTTTTCTTGAATCAGATTGCAAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTTTACGTGCCATTCTTGACCATATTCGTTACACTGGTCTTCTACCAGAGTAG 1695 0.4195 IPLPHHHPSTTTTINQPSFFLSFHGTCFLPLILQPLSSFSPSCPFPSSFFTFSSLKVSISYMAPPSDINHFSHPCIYGDYSSSRSERRPSFMKWLSKLFKGGSNRGRGGRRLQEPDEENIAWRAPPRPFDDGSRAHNRENDDLGHAMSRSSAEDLKRPNAHEGYNWGTDNDDYGKALQDSLNSSAYPPYNAAPYYPRDYRKICGGCNQEILYGNCLGCLDTYFHPDCFRCHACQYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTSRCCSCERLEPRNVKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMKIGQQIPMLLVAREALNEAIVGEKNAVHHMPETRGICLSEEQTITSIHRKPRHGGHRRMTRTQNQMLVRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSTSAAAASSSYPSSSSSSSKKGAKSHVENKLGEFFLNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIRYTGLLPE* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1019 564 ProSiteProfiles LIM domain profile. 201 261 IPR001781 -
Amo11g1019 564 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 81 563 - -
Amo11g1019 564 Gene3D Cysteine Rich Protein 189 260 - -
Amo11g1019 564 PANTHER PROTEIN DA1-RELATED 2 81 563 IPR045218 -
Amo11g1019 564 SMART lim_4 202 254 IPR001781 -
Amo11g1019 564 ProSitePatterns LIM zinc-binding domain signature. 203 237 IPR001781 -
Amo11g1019 564 Pfam LIM domain 203 256 IPR001781 -
Amo11g1019 564 CDD LIM_DA1 203 255 - -
Amo11g1019 564 MobiDBLite consensus disorder prediction 107 160 - -
Amo11g1019 564 MobiDBLite consensus disorder prediction 103 167 - -
Amo11g1019 564 Pfam Protein DA1 352 558 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1019 Amo-Chr11 29830729 29835717 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo11g1019 DA1-like 1e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1019 - - aip:107608934 1023.08